Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 1.2e-127 459.9 233 100.0
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 5.9e-116 421.0 240 90.4
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 3.2e-114 415.2 240 87.9
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 1.2e-111 406.8 240 86.2
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 2.6e-111 405.6 240 85.8
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.3e-110 403.3 230 90.4
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 2.8e-110 402.1 240 85.4
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 5.4e-109 397.9 224 88.4
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.5e-106 389.8 240 84.2
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 8.9e-104 380.6 225 86.2
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 2.2e-102 375.9 225 85.8
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 2.9e-102 375.6 240 81.2
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 3.7e-102 375.2 236 83.1
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 5.9e-100 367.9 224 81.2
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 5.9e-100 367.9 225 81.3
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.5e-98 363.2 218 83.0
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.5e-98 363.2 222 81.5
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 2.5e-98 362.5 225 79.6
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 2.1e-97 359.4 224 79.9
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.4e-96 356.7 221 79.2
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 1.4e-96 356.7 220 79.5
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 5.2e-96 354.8 224 79.9
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 6.8e-96 354.4 225 77.3
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 6.8e-96 354.4 219 80.8
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 8.9e-96 354.0 225 77.8
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.2e-95 353.6 220 80.0
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 1.5e-95 353.2 225 78.2
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 7.5e-95 350.9 225 76.4
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.8e-95 350.5 230 77.0
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.7e-94 349.7 230 77.4
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.2e-94 349.4 225 76.0
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.7e-94 348.6 225 76.0
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.3e-94 347.4 225 76.0
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 3.2e-93 345.5 221 79.2
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.2e-93 345.5 230 76.1
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 7.0e-93 344.4 221 77.4
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 2.7e-92 342.4 229 74.2
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 2.7e-92 342.4 224 76.3
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 4.6e-92 341.7 222 77.9
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 5.0e-91 338.2 220 76.8
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 1.1e-90 337.0 221 77.4
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.6e-90 334.7 227 73.6
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 2.1e-89 332.8 219 74.4
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.8e-89 332.4 228 74.1
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 4.7e-89 331.6 219 73.1
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 6.2e-89 331.3 228 73.7
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 6.2e-89 331.3 228 73.7
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 2.3e-88 329.3 219 72.6
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 5.2e-88 328.2 219 74.4
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 2.0e-87 326.2 220 73.6
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 7.5e-87 324.3 219 71.2
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 7.5e-87 324.3 221 71.9
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 7.5e-87 324.3 223 73.1
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 2.2e-86 322.8 223 73.5
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.9e-86 322.4 223 74.0
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 8.3e-86 320.9 224 72.8
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.9e-85 319.7 226 70.8
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 2.4e-85 319.3 229 72.1
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 2.4e-85 319.3 229 71.6
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 5.4e-85 318.2 229 69.9
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 5.4e-85 318.2 221 73.8
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 3.9e-83 312.0 218 72.5
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 5.1e-83 311.6 218 72.0
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.1e-82 310.5 229 70.7
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.5e-82 310.1 214 73.4
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 9.5e-82 307.4 224 67.9
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 9.5e-82 307.4 221 71.5
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 9.5e-82 307.4 266 61.3
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.6e-81 306.6 221 71.0
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.2e-81 304.7 222 71.2
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.8e-80 303.1 219 69.9
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 4.0e-80 302.0 221 69.7
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 4.0e-80 302.0 221 67.4
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.2e-79 300.4 222 70.3
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.4e-77 293.5 197 75.1
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.1e-76 289.7 223 64.6
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 2.7e-76 289.3 233 65.7
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 4.6e-76 288.5 226 65.0
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 7.8e-76 287.7 232 60.8
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 1.7e-75 286.6 220 65.9
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 6.6e-75 284.6 220 64.1
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 8.6e-75 284.3 221 65.6
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 2.5e-74 282.7 222 66.7
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 9.6e-74 280.8 237 62.0
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 9.6e-74 280.8 237 62.0
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.6e-73 280.0 224 63.4
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 1.6e-73 280.0 218 64.2
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 1.6e-73 280.0 218 64.2
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.6e-73 280.0 221 65.2
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 4.7e-73 278.5 237 61.6
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 5.2e-72 275.0 217 64.1
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 2.0e-71 273.1 220 60.5
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.1e-69 267.3 198 68.2
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.3e-67 259.6 235 57.9
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 3.9e-67 258.8 211 63.0
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 9.0e-64 247.7 221 58.4
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 2.6e-63 246.1 231 58.0
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 1.7e-62 243.4 184 69.0
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 5.4e-61 238.4 223 60.1
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 2.7e-60 236.1 223 60.1
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 2.3e-59 233.0 225 56.0
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 5.1e-59 231.9 232 55.2
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 2.4e-56 223.0 147 74.1
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 3.4e-55 219.2 182 63.7
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 3.8e-54 215.7 156 69.9
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 8.4e-54 214.5 222 53.6
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 8.4e-54 214.5 221 52.5
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.9e-53 213.4 183 61.2
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 7.1e-53 211.5 224 51.3
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 9.3e-53 211.1 227 52.9
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.2e-52 210.7 228 50.9
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 5.6e-50 201.8 220 52.7
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 4.8e-49 198.7 245 48.6
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 6.2e-49 198.4 219 45.2
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 2.6e-47 193.0 149 65.1
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 7.6e-47 191.4 197 51.8
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 6.0e-44 181.8 154 57.8
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.0e-43 181.0 157 56.1
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 3.0e-43 179.5 225 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 4.8e-41 172.2 221 43.0
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.2e-39 167.5 97 86.6
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 2.6e-39 166.4 260 39.6
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 3.7e-33 146.0 181 47.5
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 1.8e-32 143.7 147 51.7
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 5.0e-30 135.6 116 61.2
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 8.5e-30 134.8 93 79.6
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 9.1e-24 114.8 71 80.3
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.8e-22 109.4 69 76.8
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.4e-21 107.5 68 77.9
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 1.2e-20 104.4 179 34.6
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.2e-10 71.2 93 40.9


User provided reference genes

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