Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31211 Trifolium pratense HOM05D003483 ORTHO05D004101 3.5e-21 104.0 51 100.0
TPR.G30715 Trifolium pratense HOM05D003483 ORTHO05D004101 1.7e-20 101.7 51 96.1
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 3.6e-18 94.0 51 90.2
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 4.0e-17 90.5 51 90.2
Psat1g224320 Pisum sativum HOM05D003483 ORTHO05D004101 5.2e-17 90.1 51 88.2
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 2.2e-15 84.7 51 78.4
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 8.4e-15 82.8 51 82.4
COL.COLO4_17880 Corchorus olitorius HOM05D003483 ORTHO05D004101 1.1e-14 82.4 51 76.5
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 3.2e-14 80.9 51 76.5
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 3.2e-14 80.9 51 80.4
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 4.2e-14 80.5 51 78.4
Eucgr.I02716 Eucalyptus grandis HOM05D003483 ORTHO05D004101 5.4e-14 80.1 51 78.4
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 5.4e-14 80.1 51 80.4
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 5.4e-14 80.1 51 76.5
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 5.4e-14 80.1 51 76.5
TPR.G22934 Trifolium pratense HOM05D003483 ORTHO05D004101 5.4e-14 80.1 39 94.9
CSS0036812 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 7.1e-14 79.7 51 76.5
CSS0038053 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 7.1e-14 79.7 51 76.5
Duzib248G1166 Durio zibethinus HOM05D003483 ORTHO05D004101 7.1e-14 79.7 51 76.5
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 7.1e-14 79.7 51 70.6
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 9.2e-14 79.3 51 74.5
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 9.2e-14 79.3 51 72.5
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 9.2e-14 79.3 51 76.5
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 9.2e-14 79.3 51 78.4
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 9.2e-14 79.3 51 78.4
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 9.2e-14 79.3 51 74.5
Ciclev10003624m.g Citrus clementina HOM05D003483 ORTHO05D004101 1.2e-13 79.0 51 76.5
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 1.2e-13 79.0 51 74.5
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 1.2e-13 79.0 51 76.5
Dinv24264 Davidia involucrata HOM05D003483 ORTHO05D004101 1.6e-13 78.6 51 76.5
Gohir.A04G126900 Gossypium hirsutum HOM05D003483 ORTHO05D004101 1.6e-13 78.6 51 74.5
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 1.6e-13 78.6 50 76.0
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 1.6e-13 78.6 51 74.5
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 1.6e-13 78.6 51 78.4
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 2.1e-13 78.2 51 74.5
Gohir.A01G177800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 2.1e-13 78.2 51 72.5
Gohir.D01G168600 Gossypium hirsutum HOM05D003483 ORTHO05D004101 2.1e-13 78.2 51 72.5
Gorai.002G209300 Gossypium raimondii HOM05D003483 ORTHO05D004101 2.1e-13 78.2 51 72.5
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 2.7e-13 77.8 51 76.5
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 2.7e-13 77.8 51 74.5
Lj6g0024243 Lotus japonicus HOM05D003483 ORTHO05D004101 2.7e-13 77.8 47 80.9
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 2.7e-13 77.8 51 72.5
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 3.5e-13 77.4 51 74.5
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 3.5e-13 77.4 51 74.5
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 3.5e-13 77.4 51 76.5
QL02p098403 Quercus lobata HOM05D003483 ORTHO05D004101 3.5e-13 77.4 51 76.5
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 3.5e-13 77.4 51 74.5
Gorai.012G160700 Gossypium raimondii HOM05D003483 ORTHO05D004101 4.6e-13 77.0 51 72.5
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 4.6e-13 77.0 51 74.5
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 4.6e-13 77.0 51 76.5
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 4.6e-13 77.0 51 76.5
Prupe.1G566700 Prunus persica HOM05D003483 ORTHO05D004101 4.6e-13 77.0 51 74.5
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 4.6e-13 77.0 51 74.5
CiPaw.06G148300 Carya illinoinensis HOM05D003483 ORTHO05D004101 6.0e-13 76.6 51 72.5
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 6.0e-13 76.6 51 72.5
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 6.0e-13 76.6 51 76.5
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 6.0e-13 76.6 51 74.5
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 7.8e-13 76.3 51 72.5
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 7.8e-13 76.3 51 72.5
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 7.8e-13 76.3 51 72.5
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 7.8e-13 76.3 51 72.5
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 7.8e-13 76.3 51 74.5
Hund01591 Selenicereus undatus HOM05D003483 ORTHO05D004101 7.8e-13 76.3 51 70.6
Solyc01g104320.4 Solanum lycopersicum HOM05D003483 ORTHO05D004101 7.8e-13 76.3 51 76.5
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 1.0e-12 75.9 51 72.5
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 1.0e-12 75.9 51 70.6
Gohir.D04G171800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 1.0e-12 75.9 51 70.6
Haze_01648 Corylus avellana HOM05D003483 ORTHO05D004101 1.3e-12 75.5 51 72.5
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 1.3e-12 75.5 51 72.5
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 1.3e-12 75.5 51 72.5
Solyc11g044530.2 Solanum lycopersicum HOM05D003483 ORTHO05D004101 1.3e-12 75.5 51 70.6
Sopen11g020090 Solanum pennellii HOM05D003483 ORTHO05D004101 1.3e-12 75.5 51 70.6
CANSAT11G2084 Cannabis sativa HOM05D003483 ORTHO05D004101 1.7e-12 75.1 50 74.0
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.7e-12 75.1 51 74.5
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 1.7e-12 75.1 51 74.5
Sopen01g046770 Solanum pennellii HOM05D003483 ORTHO05D004101 1.7e-12 75.1 51 74.5
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 1.7e-12 75.1 51 74.5
vmacro01767 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 1.7e-12 75.1 51 72.5
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 2.3e-12 74.7 51 72.5
Cfa005532 Carpinus fangiana HOM05D003483 ORTHO05D004101 2.3e-12 74.7 51 72.5
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 2.3e-12 74.7 51 68.6
Haze_01644 Corylus avellana HOM05D003483 ORTHO05D004101 2.3e-12 74.7 51 72.5
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 2.3e-12 74.7 51 70.6
Lj6g0009955 Lotus japonicus HOM05D003483 ORTHO05D004101 3.0e-12 74.3 51 70.6
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 3.0e-12 74.3 51 70.6
Oeu000192.1 Olea europaea HOM05D003483 ORTHO05D004101 3.9e-12 73.9 51 72.5
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 3.9e-12 73.9 51 70.6
MSTRG.5233 Avicennia marina HOM05D003483 ORTHO05D004101 5.1e-12 73.6 51 70.6
AUR62015051 Chenopodium quinoa HOM05D003483 ORTHO05D004101 5.1e-12 73.6 51 68.6
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 5.1e-12 73.6 51 66.7
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 5.1e-12 73.6 51 66.7
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 6.6e-12 73.2 51 68.6
CARHR147060 Cardamine hirsuta HOM05D003483 ORTHO05D004101 8.7e-12 72.8 51 68.6
Cpa.g.sc2.3 Carica papaya HOM05D003483 ORTHO05D004101 8.7e-12 72.8 51 72.5
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 8.7e-12 72.8 51 66.7
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 8.7e-12 72.8 51 68.6
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 1.1e-11 72.4 49 73.5
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 1.1e-11 72.4 50 72.0
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.1e-11 72.4 50 72.0
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.1e-11 72.4 50 72.0
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.1e-11 72.4 51 70.6
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 1.5e-11 72.0 51 68.6
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 1.5e-11 72.0 49 73.5
Haze_01640 Corylus avellana HOM05D003483 ORTHO05D004101 1.5e-11 72.0 51 68.6
Haze_01645 Corylus avellana HOM05D003483 ORTHO05D004101 1.5e-11 72.0 51 68.6
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 1.5e-11 72.0 51 68.6
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 1.9e-11 71.6 50 72.0
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 1.9e-11 71.6 50 72.0
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 1.9e-11 71.6 51 70.6
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 1.9e-11 71.6 50 68.0
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.9e-11 71.6 51 68.6
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 2.5e-11 71.2 51 66.7
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 2.5e-11 71.2 51 64.7
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.5e-11 71.2 49 71.4
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.5e-11 71.2 49 71.4
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 2.5e-11 71.2 51 64.7
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 3.3e-11 70.9 54 72.2
Actinidia00213 Actinidia chinensis HOM05D003483 ORTHO05D004101 4.3e-11 70.5 51 66.7
Actinidia17473 Actinidia chinensis HOM05D004517 ORTHO05D005366 4.3e-11 70.5 51 72.5
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 4.3e-11 70.5 51 66.7
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 4.3e-11 70.5 51 70.6
Oeu000193.1 Olea europaea HOM05D003483 ORTHO05D004101 4.3e-11 70.5 51 66.7
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 4.3e-11 70.5 51 68.6
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 4.3e-11 70.5 51 66.7
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 5.6e-11 70.1 51 66.7
Ah.01g002720 Amaranthus hybridus HOM05D003483 ORTHO05D004101 9.6e-11 69.3 51 64.7
BcaC06g33930 Brassica carinata HOM05D003483 ORTHO05D004101 9.6e-11 69.3 51 66.7
C07p35050 Brassica napus HOM05D003483 ORTHO05D004101 9.6e-11 69.3 51 66.7
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 9.6e-11 69.3 51 66.7
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 9.6e-11 69.3 51 64.7
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 9.6e-11 69.3 51 66.7
Nn1g08607 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.3e-10 68.9 51 66.7
EL10Ac9g22715 Beta vulgaris HOM05D003483 ORTHO05D004101 1.6e-10 68.6 51 62.7
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 1.6e-10 68.6 51 66.7
BraA06t27143Z Brassica rapa HOM05D003483 ORTHO05D004101 1.6e-10 68.6 51 66.7
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 1.6e-10 68.6 51 62.7
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 1.6e-10 68.6 49 65.3
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 2.1e-10 68.2 51 64.7
AT3G26070 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 2.1e-10 68.2 51 64.7
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 2.1e-10 68.2 51 64.7
Aa31LG2G6290 Aethionema arabicum HOM05D003483 ORTHO05D004101 2.8e-10 67.8 51 64.7
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 2.8e-10 67.8 51 64.7
BcaC06g31094 Brassica carinata HOM05D003483 ORTHO05D004101 3.6e-10 67.4 51 64.7
AUR62015054 Chenopodium quinoa HOM05D003483 ORTHO05D004101 3.6e-10 67.4 51 62.7
DCAR_021518 Daucus carota HOM05D003483 ORTHO05D004101 3.6e-10 67.4 49 69.4
Lalb_Chr15g0090651 Lupinus albus HOM05D003483 ORTHO05D004101 3.6e-10 67.4 51 64.7
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 3.6e-10 67.4 50 66.0
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 3.6e-10 67.4 49 65.3
TPR.G2065 Trifolium pratense HOM05D003483 ORTHO05D004101 3.6e-10 67.4 31 100.0
AL5G14760 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 4.8e-10 67.0 51 62.7
Carub.0005s0393 Capsella rubella HOM05D003483 ORTHO05D004101 4.8e-10 67.0 51 62.7
QL02p098396 Quercus lobata HOM05D003483 ORTHO05D004101 4.8e-10 67.0 51 64.7
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 4.8e-10 67.0 51 64.7
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 4.8e-10 67.0 49 69.4
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 8.1e-10 66.2 50 62.0
FAN04G0580 Fragaria x ananassa HOM05D003483 ORTHO05D004101 8.1e-10 66.2 51 68.6
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 8.1e-10 66.2 50 68.0
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 1.1e-09 65.9 51 62.7
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 1.4e-09 65.5 51 60.8
Carub.0005s0394 Capsella rubella HOM05D003483 ORTHO05D004101 1.8e-09 65.1 51 62.7
AT3G26080 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 2.4e-09 64.7 51 60.8
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 1.2e-08 62.4 49 63.3
Sabra03G0012000 Salix brachista HOM05D003483 ORTHO05D004101 2.0e-08 61.6 69 49.3
AUR62017511 Chenopodium quinoa HOM05D003483 ORTHO05D004101 7.6e-08 59.7 35 77.1
vmacro19900 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 7.6e-08 59.7 38 78.9
ClCG09G014000 Citrullus lanatus HOM05D003483 ORTHO05D004101 9.9e-08 59.3 38 71.1
BcaC06g31097 Brassica carinata HOM05D000468 ORTHO05D004101 1.3e-07 58.9 38 73.7
CBR_g3139 Chara braunii HOM05D003483 ORTHO05D004101 1.7e-07 58.5 51 56.9
Nitab4.5_0001783g0130 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.7e-07 58.5 38 73.7
Peaxi162Scf00152g01330 Petunia axillaris HOM05D003483 ORTHO05D004101 8.4e-07 56.2 37 73.0
Nitab4.5_0000044g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.4e-06 54.7 44 63.6


User provided reference genes

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