Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 1.1e-69 266.5 139 100.0
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 8.6e-54 213.8 129 87.6
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 5.2e-51 204.5 137 81.0
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.7e-49 198.4 137 81.0
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 1.9e-29 132.9 134 64.2
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 1.9e-24 116.3 135 62.2
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.2e-20 103.6 136 56.6
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 2.8e-20 102.4 132 51.5
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 6.8e-19 97.8 124 54.8
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 6.8e-19 97.8 136 50.7
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.2e-18 97.1 123 52.8
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 3.8e-17 92.0 123 48.8
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 4.9e-17 91.7 124 49.2
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 1.2e-15 87.0 126 47.6
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 3.5e-15 85.5 125 48.0
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 1.7e-14 83.2 127 49.6
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 1.5e-13 80.1 83 59.0
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.8e-12 75.1 85 54.1
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.0e-11 70.9 69 58.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 3.4e-10 68.9 90 47.8
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 4.4e-10 68.6 89 53.9
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 4.4e-10 68.6 89 53.9
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 9.9e-10 67.4 138 42.8
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 1.3e-09 67.0 70 58.6
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.3e-09 67.0 70 58.6
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.2e-09 66.2 65 60.0
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.2e-09 66.2 65 60.0
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.2e-09 66.2 65 60.0
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.2e-09 66.2 118 42.4
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.8e-09 65.5 138 38.4
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.9e-09 65.1 123 41.5
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.4e-09 64.7 128 42.2
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.4e-09 64.7 136 39.0
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.4e-09 64.7 65 60.0
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 6.4e-09 64.7 50 66.0
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 6.4e-09 64.7 65 60.0
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.4e-09 64.7 56 64.3
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 8.4e-09 64.3 56 66.1
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 8.4e-09 64.3 66 62.1
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 8.4e-09 64.3 128 39.8
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.4e-09 64.3 52 67.3
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.1e-08 63.9 132 40.9
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.4e-08 63.5 60 56.7
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.4e-08 63.5 97 45.4
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.9e-08 63.2 95 44.2
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 2.4e-08 62.8 63 55.6
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.2e-08 62.4 46 71.7
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 3.2e-08 62.4 100 46.0
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 3.2e-08 62.4 62 58.1
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 3.2e-08 62.4 124 39.5
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 4.2e-08 62.0 128 39.1
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 5.4e-08 61.6 68 57.4
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 5.4e-08 61.6 54 59.3
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 5.4e-08 61.6 51 64.7
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 7.1e-08 61.2 50 64.0
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 7.1e-08 61.2 143 35.7
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 9.3e-08 60.8 72 47.2
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.2e-07 60.5 60 55.0
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.2e-07 60.5 60 55.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.2e-07 60.5 66 54.5
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 1.6e-07 60.1 61 57.4
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.6e-07 60.1 60 55.0
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 2.1e-07 59.7 81 49.4
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.7e-07 59.3 72 50.0
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 2.7e-07 59.3 122 38.5
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.7e-07 59.3 58 56.9
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 2.7e-07 59.3 124 41.9
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 2.7e-07 59.3 60 58.3
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.5e-07 58.9 47 68.1
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 3.5e-07 58.9 47 66.0
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.5e-07 58.9 60 56.7
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.0e-07 58.2 56 57.1
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 6.0e-07 58.2 56 57.1
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.0e-07 58.2 60 55.0
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 6.0e-07 58.2 59 55.9
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.9e-07 57.8 60 55.0
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 7.9e-07 57.8 123 38.2
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.0e-06 57.4 42 71.4
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.0e-06 57.4 131 36.6
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.0e-06 57.4 89 44.9
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.0e-06 57.4 58 53.4
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 1.0e-06 57.4 52 59.6
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.3e-06 57.0 37 75.7
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.3e-06 57.0 51 56.9
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.3e-06 57.0 74 48.6
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.3e-06 57.0 50 62.0
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.3e-06 57.0 50 62.0
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.7e-06 56.6 52 69.2
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 142 36.6
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.7e-06 56.6 93 44.1
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 1.7e-06 56.6 43 65.1
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 2.3e-06 56.2 48 64.6
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.0e-06 55.8 60 58.3
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 3.0e-06 55.8 54 57.4
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 3.0e-06 55.8 120 38.3
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 3.0e-06 55.8 51 58.8
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.0e-06 55.8 82 47.6
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.9e-06 55.5 46 58.7
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.9e-06 55.5 46 58.7
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.9e-06 55.5 54 57.4
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 3.9e-06 55.5 57 57.9
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 3.9e-06 55.5 49 63.3
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 3.9e-06 55.5 65 53.8
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.9e-06 55.5 58 58.6
Zm00001eb015160 Zea mays HOM05D002974 ORTHO05D002992 3.9e-06 55.5 37 75.7
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 5.1e-06 55.1 68 50.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.1e-06 55.1 47 61.7
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 5.1e-06 55.1 43 67.4
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 5.1e-06 55.1 35 80.0
Sabra19G0016700 Salix brachista HOM05D011447 ORTHO05D010069 5.1e-06 55.1 50 60.0
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 5.1e-06 55.1 50 60.0
Sabra19G0016900 Salix brachista HOM05D011447 ORTHO05D010069 5.1e-06 55.1 50 60.0
Sabra19G0026300 Salix brachista HOM05D011447 ORTHO05D010069 5.1e-06 55.1 50 60.0
Sabra19G0026400 Salix brachista HOM05D011447 ORTHO05D010069 5.1e-06 55.1 50 60.0
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 6.6e-06 54.7 47 59.6
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 6.6e-06 54.7 43 67.4
Zm00001eb395660 Zea mays HOM05D002974 ORTHO05D002992 6.6e-06 54.7 37 73.0
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 8.7e-06 54.3 89 43.8
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 8.7e-06 54.3 54 57.4
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 8.7e-06 54.3 82 47.6
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 8.7e-06 54.3 41 68.3
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 8.7e-06 54.3 57 52.6
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 8.7e-06 54.3 47 59.6
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 8.7e-06 54.3 100 45.0
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.7e-06 54.3 43 65.1


User provided reference genes

Program Settings