Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 6.4e-93 344.4 213 100.0
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 5.7e-73 278.1 212 84.9
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 2.3e-58 229.6 216 74.1
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 5.0e-53 211.8 164 84.1
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 9.4e-52 207.6 221 66.5
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 1.2e-51 207.2 216 65.7
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 1.3e-48 197.2 216 65.7
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 6.3e-48 194.9 216 66.2
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.1e-47 194.1 220 65.0
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.8e-47 193.4 219 64.4
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 4.1e-47 192.2 219 63.9
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 7.0e-47 191.4 221 67.4
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 4.5e-46 188.7 220 64.1
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 4.5e-46 188.7 217 64.1
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 5.9e-46 188.3 220 65.9
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 7.7e-46 188.0 217 65.9
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 1.3e-45 187.2 215 62.8
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.7e-45 186.8 218 62.4
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 5.0e-45 185.3 217 60.8
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 5.0e-45 185.3 222 62.6
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 8.5e-45 184.5 217 63.6
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.1e-44 184.1 222 63.1
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 5.5e-44 181.8 218 61.9
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 5.5e-44 181.8 221 59.3
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 7.2e-44 181.4 221 57.5
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 7.2e-44 181.4 216 63.4
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 1.2e-43 180.6 218 61.5
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 1.2e-43 180.6 216 63.9
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.2e-43 180.6 225 64.0
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.6e-43 180.3 142 70.4
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 2.7e-43 179.5 225 61.8
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 3.6e-43 179.1 216 63.0
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 3.6e-43 179.1 222 62.6
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 6.1e-43 178.3 218 61.0
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 8.0e-43 177.9 212 63.7
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 1.0e-42 177.6 220 63.6
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 1.4e-42 177.2 224 61.6
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 3.0e-42 176.0 221 63.3
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 4.0e-42 175.6 224 60.7
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 8.8e-42 174.5 218 61.5
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 8.8e-42 174.5 215 61.4
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 2.0e-41 173.3 217 62.2
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 2.6e-41 172.9 212 63.7
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 3.4e-41 172.6 218 59.6
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 5.7e-41 171.8 212 63.2
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 5.7e-41 171.8 220 60.0
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 9.8e-41 171.0 218 60.1
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 1.7e-40 170.2 218 59.6
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 2.2e-40 169.9 214 62.6
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 4.8e-40 168.7 227 61.7
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.4e-39 167.2 221 61.1
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 1.4e-39 167.2 216 62.0
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.8e-39 166.8 157 71.3
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.8e-39 166.8 221 57.5
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 2.4e-39 166.4 219 58.9
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 4.1e-39 165.6 224 57.1
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 4.1e-39 165.6 223 57.8
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 4.1e-39 165.6 223 57.8
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 4.1e-39 165.6 223 57.8
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 5.4e-39 165.2 223 58.7
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 7.0e-39 164.9 219 61.2
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.2e-38 164.1 219 61.2
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.6e-38 163.7 220 61.4
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 5.9e-38 161.8 221 58.8
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 7.7e-38 161.4 222 55.9
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 1.0e-37 161.0 219 58.9
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 1.3e-37 160.6 223 55.6
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 3.8e-37 159.1 216 61.6
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 3.8e-37 159.1 215 60.9
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 5.0e-37 158.7 157 69.4
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 8.5e-37 157.9 163 60.7
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.5e-36 157.1 218 59.6
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 1.9e-36 156.8 218 51.4
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 5.5e-36 155.2 176 59.7
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 9.4e-36 154.5 181 60.2
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 9.4e-36 154.5 217 56.7
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.6e-35 153.7 220 57.3
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.6e-35 153.7 223 56.1
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 4.7e-35 152.1 174 57.5
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 4.0e-34 149.1 127 74.8
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 2.0e-33 146.7 221 57.5
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 5.7e-33 145.2 225 52.9
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 1.4e-31 140.6 219 56.2
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 1.4e-31 140.6 141 70.9
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 4.1e-31 139.0 212 55.7
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 1.2e-30 137.5 210 57.1
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 9.5e-28 127.9 152 63.2
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 4.0e-26 122.5 168 58.3
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.2e-25 120.9 105 78.1
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 1.5e-25 120.6 165 59.4
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 4.4e-25 119.0 159 54.1
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 7.5e-25 118.2 126 68.3
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 4.9e-24 115.5 215 50.7
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 8.3e-24 114.8 145 61.4
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 2.7e-22 109.8 76 77.6
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 4.6e-22 109.0 85 65.9
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 1.3e-21 107.5 153 53.6
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 6.6e-21 105.1 105 71.4
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 2.5e-20 103.2 84 70.2
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 3.3e-20 102.8 105 71.4
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.6e-19 100.5 140 47.1
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.3e-18 96.7 210 31.4
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 2.2e-16 90.1 163 46.0
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.7e-16 89.4 107 66.4
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 6.4e-16 88.6 143 46.2
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 8.3e-16 88.2 85 55.3
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 8.3e-16 88.2 85 55.3
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.4e-15 87.4 95 49.5
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.9e-15 87.0 85 54.1
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 1.7e-13 80.5 60 68.3
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 2.8e-11 73.2 120 41.7
ATR0829G181 Amborella trichopoda HOM05D007100 ORTHO05D008958 4.1e-07 59.3 137 38.0
ATR0743G144 Amborella trichopoda HOM05D007100 ORTHO05D008958 7.1e-07 58.5 104 43.3
AUR62039691 Chenopodium quinoa HOM05D026575 ORTHO05D028765 3.5e-06 56.2 59 57.6


User provided reference genes

Program Settings