Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 4.7e-68 261.2 139 100.0
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 4.7e-52 208.0 141 80.1
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 4.6e-39 164.9 145 67.6
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 9.5e-37 157.1 142 64.8
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.4e-32 143.3 140 65.7
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 1.2e-31 140.2 114 65.8
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.5e-31 138.7 139 55.4
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 7.8e-31 137.5 139 54.7
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 7.3e-29 131.0 117 67.5
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 2.8e-28 129.0 117 67.5
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.2e-25 119.4 137 48.2
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 3.7e-25 118.6 138 44.9
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 8.4e-25 117.5 138 47.1
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 1.4e-24 116.7 96 65.6
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 3.2e-24 115.5 139 48.9
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 4.1e-24 115.2 91 71.4
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 5.4e-24 114.8 108 69.4
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 9.2e-24 114.0 86 76.7
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 1.6e-23 113.2 100 65.0
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 2.7e-23 112.5 96 58.3
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 2.7e-23 112.5 139 47.5
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 3.5e-23 112.1 139 42.4
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.5e-23 112.1 86 75.6
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 3.5e-23 112.1 139 53.2
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 4.6e-23 111.7 118 47.5
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 1.3e-22 110.2 140 43.6
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 3.9e-22 108.6 93 62.4
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 6.6e-22 107.8 140 43.6
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 6.6e-22 107.8 140 46.4
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 8.6e-22 107.5 87 69.0
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-21 107.1 114 48.2
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.5e-21 106.7 114 47.4
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 1.5e-21 106.7 137 45.3
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.9e-21 106.3 139 44.6
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.9e-21 106.3 140 42.1
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.5e-21 105.9 114 48.2
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 2.5e-21 105.9 116 50.0
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 3.3e-21 105.5 82 59.8
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.3e-21 105.5 80 65.0
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.3e-21 105.5 114 50.0
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.6e-21 104.8 139 41.0
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 5.6e-21 104.8 139 41.0
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 7.3e-21 104.4 143 51.0
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.6e-21 104.0 135 48.1
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 9.6e-21 104.0 139 51.1
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.2e-20 103.6 116 44.8
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 1.6e-20 103.2 139 42.4
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.6e-20 103.2 113 57.5
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 2.1e-20 102.8 77 61.0
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 3.6e-20 102.1 102 50.0
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 3.6e-20 102.1 115 48.7
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 4.7e-20 101.7 68 73.5
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 4.7e-20 101.7 84 57.1
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 4.7e-20 101.7 83 55.4
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 6.2e-20 101.3 91 59.3
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 6.2e-20 101.3 143 40.6
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 6.2e-20 101.3 80 62.5
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 1.1e-19 100.5 139 40.3
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 1.1e-19 100.5 139 41.7
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.4e-19 100.1 116 61.2
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.4e-19 99.4 138 46.4
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 2.4e-19 99.4 139 48.9
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 2.4e-19 99.4 89 70.8
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 3.1e-19 99.0 137 51.8
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 3.1e-19 99.0 106 57.5
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.0e-19 98.6 105 58.1
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.0e-19 98.6 105 58.1
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 4.0e-19 98.6 92 51.1
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 5.2e-19 98.2 142 48.6
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 5.2e-19 98.2 85 64.7
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 6.8e-19 97.8 89 70.8
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 6.8e-19 97.8 139 51.1
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 8.9e-19 97.4 116 49.1
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 8.9e-19 97.4 85 61.2
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 1.2e-18 97.1 139 41.0
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.2e-18 97.1 112 50.9
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.5e-18 96.7 140 42.9
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 1.5e-18 96.7 139 44.6
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 2.0e-18 96.3 90 53.3
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 2.6e-18 95.9 80 60.0
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 2.6e-18 95.9 98 64.3
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 2.6e-18 95.9 141 41.1
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 2.6e-18 95.9 141 44.7
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 3.4e-18 95.5 140 42.1
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 3.4e-18 95.5 105 57.1
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 4.4e-18 95.1 140 37.9
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 4.4e-18 95.1 139 42.4
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 4.4e-18 95.1 100 57.0
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 9.9e-18 94.0 112 54.5
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 9.9e-18 94.0 143 46.9
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 1.7e-17 93.2 139 41.7
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.2e-17 92.8 106 50.0
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 2.2e-17 92.8 106 50.0
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 2.2e-17 92.8 85 50.6
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 2.9e-17 92.4 102 59.8
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 3.8e-17 92.0 73 79.5
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 3.8e-17 92.0 86 65.1
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 3.8e-17 92.0 96 62.5
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 4.9e-17 91.7 139 41.0
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 6.4e-17 91.3 139 48.9
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 8.4e-17 90.9 114 53.5
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 1.1e-16 90.5 86 48.8
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.4e-16 90.1 89 50.6
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.9e-16 89.7 100 50.0
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 2.4e-16 89.4 82 53.7
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.2e-16 89.0 73 56.2
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 3.2e-16 89.0 101 56.4
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 4.2e-16 88.6 137 48.9
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.2e-16 88.6 137 48.9
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 4.2e-16 88.6 94 59.6
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 5.4e-16 88.2 69 58.0
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 7.1e-16 87.8 105 49.5
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 9.3e-16 87.4 129 43.4
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.2e-15 87.0 137 48.9
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.6e-15 86.7 91 52.7
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 1.6e-15 86.7 96 46.9
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 2.7e-15 85.9 69 60.9
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 3.5e-15 85.5 81 66.7
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 3.5e-15 85.5 91 57.1
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 6.0e-15 84.7 139 43.2
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 6.0e-15 84.7 125 37.6
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 7.8e-15 84.3 77 59.7
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 1.0e-14 84.0 146 40.4
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 1.3e-14 83.6 75 58.7
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 1.3e-14 83.6 139 46.0
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.7e-14 83.2 82 56.1
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 2.3e-14 82.8 124 43.5
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 2.3e-14 82.8 77 57.1
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.1e-14 81.6 81 56.8
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 5.1e-14 81.6 137 44.5
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 6.6e-14 81.3 82 46.3
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 1.1e-13 80.5 101 50.5
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 1.5e-13 80.1 99 43.4
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 1.9e-13 79.7 102 54.9
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 2.5e-13 79.3 63 73.0
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 3.3e-13 79.0 82 62.2
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 9.6e-13 77.4 97 48.5
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 2.1e-12 76.3 139 39.6
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 2.1e-12 76.3 86 60.5
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 2.1e-12 76.3 69 52.2
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 2.8e-12 75.9 139 38.1
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 3.6e-12 75.5 85 50.6
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 3.6e-12 75.5 148 37.2
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 3.6e-12 75.5 148 37.2
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 3.6e-12 75.5 86 51.2
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 4.8e-12 75.1 82 61.0
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 4.8e-12 75.1 82 53.7
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 4.8e-12 75.1 82 53.7
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 6.2e-12 74.7 82 53.7
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 6.2e-12 74.7 82 61.0
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 6.2e-12 74.7 128 39.1
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.1e-11 73.9 82 53.7
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 1.1e-11 73.9 106 51.9
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.4e-11 73.6 141 39.0
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.4e-11 73.6 71 50.7
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 1.8e-11 73.2 82 59.8
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 1.8e-11 73.2 82 52.4
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 1.8e-11 73.2 82 52.4
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 1.8e-11 73.2 82 59.8
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 1.8e-11 73.2 59 59.3
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 1.8e-11 73.2 85 48.2
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 2.4e-11 72.8 83 49.4
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 3.1e-11 72.4 72 56.9
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 3.1e-11 72.4 72 56.9
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 4.0e-11 72.0 73 63.0
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.0e-11 72.0 63 69.8
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 9.0e-11 70.9 82 58.5
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 9.0e-11 70.9 82 58.5
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 9.0e-11 70.9 82 56.1
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 2.6e-10 69.3 72 59.7
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.6e-10 69.3 139 36.0
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 9.9e-10 67.4 114 40.4
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.3e-09 67.0 55 69.1
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.7e-09 66.6 86 45.3
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 3.8e-09 65.5 138 36.2
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 4.9e-09 65.1 81 55.6
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 4.9e-09 65.1 77 41.6
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 6.4e-09 64.7 82 50.0
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 3.2e-08 62.4 88 48.9
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 5.1e-06 55.1 83 39.8
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 5.1e-06 55.1 83 39.8


User provided reference genes

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