Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31053 Trifolium pratense HOM05D033735 ORTHO05D410983 0.0e+00 1641.3 815 100.0
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 8.1e-35 153.3 131 59.5
TPR.G20825 Trifolium pratense HOM05D001247 ORTHO05D410557 1.2e-19 102.8 142 46.5
TPR.G4161 Trifolium pratense HOM05D001247 ORTHO05D411878 3.1e-18 98.2 157 39.5
TPR.G36034 Trifolium pratense HOM05D004351 ORTHO05D411024 4.0e-18 97.8 85 57.6
TPR.G23048 Trifolium pratense HOM05D001247 ORTHO05D001111 8.9e-18 96.7 84 60.7
TPR.G10910 Trifolium pratense HOM05D033735 ORTHO05D412871 5.4e-15 87.4 195 36.9
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.6e-14 85.9 79 63.3
TPR.G22228 Trifolium pratense HOM05D000004 ORTHO05D000002 1.1e-12 79.7 100 41.0
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 5.6e-12 77.4 214 29.0
Duzib068G0303 Durio zibethinus HOM05D002609 ORTHO05D002820 1.3e-11 76.3 74 50.0
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 2.8e-11 75.1 206 29.1
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 6.2e-11 73.9 214 27.6
TPR.G28616 Trifolium pratense HOM05D000004 ORTHO05D000002 6.2e-11 73.9 98 39.8
Duzib084G1039 Durio zibethinus HOM05D002609 ORTHO05D002820 1.1e-10 73.2 74 47.3
Gohir.A12G269200 Gossypium hirsutum HOM05D002609 ORTHO05D002820 1.1e-10 73.2 74 47.3
CANSAT80G0387 Cannabis sativa HOM05D002609 ORTHO05D002820 1.4e-10 72.8 74 45.9
Gorai.008G289900 Gossypium raimondii HOM05D002609 ORTHO05D002820 1.4e-10 72.8 74 47.3
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 1.4e-10 72.8 214 27.6
TPR.G32498 Trifolium pratense HOM05D000004 ORTHO05D000002 1.8e-10 72.4 100 39.0
TPR.G36744 Trifolium pratense HOM05D033735 ORTHO05D007628 2.4e-10 72.0 89 46.1
Gohir.D12G269600 Gossypium hirsutum HOM05D002609 ORTHO05D002820 3.1e-10 71.6 74 47.3
Phvul.002G330400 Phaseolus vulgaris HOM05D002609 ORTHO05D002820 3.1e-10 71.6 75 45.3
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 4.0e-10 71.2 281 29.9
EL10Ac8g20282 Beta vulgaris HOM05D002609 ORTHO05D002820 5.3e-10 70.9 74 44.6
Glyma.07G102700 Glycine max HOM05D002609 ORTHO05D002820 5.3e-10 70.9 112 37.5
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.5e-09 69.3 88 40.9
Prupe.5G233000 Prunus persica HOM05D002609 ORTHO05D002820 2.0e-09 68.9 74 45.9
AUR62042376 Chenopodium quinoa HOM05D002609 ORTHO05D002820 2.6e-09 68.6 93 38.7
AUR62044157 Chenopodium quinoa HOM05D002609 ORTHO05D002820 2.6e-09 68.6 93 38.7
Ah.11g045260 Amaranthus hybridus HOM05D002609 ORTHO05D002820 4.5e-09 67.8 74 41.9
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 4.5e-09 67.8 206 27.2
Glyma.05G246500 Glycine max HOM05D002609 ORTHO05D002820 4.5e-09 67.8 74 44.6
PGSC0003DMG400028798 Solanum tuberosum HOM05D002609 ORTHO05D002820 4.5e-09 67.8 74 41.9
VMungo0464G1191 Vigna mungo HOM05D002609 ORTHO05D002820 4.5e-09 67.8 112 34.8
arahy.Tifrunner.gnm1.ann1.DWWZ6G Arachis hypogaea HOM05D002609 ORTHO05D002820 5.8e-09 67.4 97 38.1
arahy.Tifrunner.gnm1.ann1.T6QC8B Arachis hypogaea HOM05D002609 ORTHO05D002820 5.8e-09 67.4 97 38.1
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 5.8e-09 67.4 206 28.2
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 5.8e-09 67.4 183 30.6
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 7.6e-09 67.0 206 28.2
Sed0015959 Sechium edule HOM05D002609 ORTHO05D002820 7.6e-09 67.0 74 41.9
AUR62044208 Chenopodium quinoa HOM05D002609 ORTHO05D002820 9.9e-09 66.6 74 41.9
Lj5A157T57 Lonicera japonica HOM05D002609 ORTHO05D002820 9.9e-09 66.6 74 43.2
Lalb_Chr09g0330381 Lupinus albus HOM05D002609 ORTHO05D002820 9.9e-09 66.6 74 41.9
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 9.9e-09 66.6 94 43.6
TWI15G0267 Tripterygium wilfordii HOM05D002609 ORTHO05D002820 9.9e-09 66.6 74 44.6
Lsat_1_v5_gn_2_11881 Lactuca sativa HOM05D002609 ORTHO05D002820 1.3e-08 66.2 74 41.9
Psat1g030720 Pisum sativum HOM05D002609 ORTHO05D002820 1.7e-08 65.9 112 34.8
Ca_10136_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 2.2e-08 65.5 120 34.2
Ca_30624_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 2.2e-08 65.5 120 34.2
Solyc06g068950.4 Solanum lycopersicum HOM05D002609 ORTHO05D002820 2.2e-08 65.5 74 40.5
Sopen06g026240 Solanum pennellii HOM05D002609 ORTHO05D002820 2.2e-08 65.5 74 41.9
Aqoxy3G00070 Aquilegia oxysepala HOM05D002609 ORTHO05D002820 3.8e-08 64.7 74 41.9
Aqoxy4G00556 Aquilegia oxysepala HOM05D002609 ORTHO05D002820 3.8e-08 64.7 74 41.9
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 4.9e-08 64.3 206 27.2
Sp1g35550 Schrenkiella parvula HOM05D002609 ORTHO05D002820 4.9e-08 64.3 73 43.8
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 6.4e-08 63.9 200 27.0
VMungo0720G2627 Vigna mungo HOM05D000001 ORTHO05D009773 6.4e-08 63.9 87 34.5
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 1.1e-07 63.2 212 26.9
MELO3C017356.2 Cucumis melo HOM05D002609 ORTHO05D002820 1.1e-07 63.2 74 40.5
unitig_52.g17267 Utricularia gibba HOM05D002609 ORTHO05D002820 1.1e-07 63.2 74 40.5
Migut.I00307 Erythranthe guttata HOM05D002609 ORTHO05D002820 1.4e-07 62.8 74 40.5
TPR.G1459 Trifolium pratense HOM05D002609 ORTHO05D002820 1.4e-07 62.8 74 40.5
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.9e-07 62.4 245 24.9
CsaV3_1G004330 Cucumis sativus L. HOM05D002609 ORTHO05D002820 1.9e-07 62.4 71 40.8
CAN.G517.6 Capsicum annuum HOM05D000446 ORTHO05D000002 3.2e-07 61.6 102 31.4
Rhsim01G0051500 Rhododendron simsii HOM05D000004 ORTHO05D000002 5.4e-07 60.8 102 33.3
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 5.4e-07 60.8 206 27.7
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 5.4e-07 60.8 207 25.1
CAN.G423.29 Capsicum annuum HOM05D002609 ORTHO05D002820 7.1e-07 60.5 74 41.9
Gohir.A03G093100 Gossypium hirsutum HOM05D002609 ORTHO05D002820 7.1e-07 60.5 74 41.9
Gohir.D02G122100 Gossypium hirsutum HOM05D002609 ORTHO05D002820 7.1e-07 60.5 74 41.9
Gorai.005G132000 Gossypium raimondii HOM05D002609 ORTHO05D002820 7.1e-07 60.5 74 41.9
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 7.1e-07 60.5 200 27.5
CSS0005910 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 9.3e-07 60.1 57 49.1
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 9.3e-07 60.1 200 28.5
CAN.G189.28 Capsicum annuum HOM05D000004 ORTHO05D000002 1.2e-06 59.7 91 34.1
Glyma.10G094300 Glycine max HOM05D000001 ORTHO05D009773 1.2e-06 59.7 87 33.3
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 1.2e-06 59.7 201 26.9
Medtr7g062650 Medicago truncatula HOM05D004351 ORTHO05D266777 1.2e-06 59.7 57 50.9
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 3.5e-06 58.2 199 27.1
Lalb_Chr01g0016101 Lupinus albus HOM05D000004 ORTHO05D000002 3.5e-06 58.2 57 47.4
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 4.6e-06 57.8 45 62.2
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 6.0e-06 57.4 196 28.6
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 6.0e-06 57.4 196 28.6
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 6.0e-06 57.4 81 38.3


User provided reference genes

Program Settings