Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31044 Trifolium pratense HOM05D000081 ORTHO05D000036 2.3e-30 134.8 63 100.0
TPR.G16686 Trifolium pratense HOM05D000081 ORTHO05D000036 5.6e-29 130.2 63 96.8
Medtr3g009470 Medicago truncatula HOM05D000081 ORTHO05D000036 1.0e-25 119.4 63 90.5
Psat5g231120 Pisum sativum HOM05D000081 ORTHO05D000036 4.2e-24 114.0 63 84.1
Lj3g0012883 Lotus japonicus HOM05D000081 ORTHO05D000036 4.3e-21 104.0 62 79.0
Phvul.005G005800 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 3.7e-20 100.9 62 77.4
Glyma.06G320700 Glycine max HOM05D000081 ORTHO05D000036 5.3e-19 97.1 62 74.2
VMungo1080G0615 Vigna mungo HOM05D000081 ORTHO05D000036 9.0e-19 96.3 62 74.2
Lalb_Chr04g0259421 Lupinus albus HOM05D000081 ORTHO05D000036 3.8e-17 90.9 62 72.6
Lalb_Chr18g0048721 Lupinus albus HOM05D000081 ORTHO05D000036 3.8e-17 90.9 62 71.0
arahy.Tifrunner.gnm1.ann1.691ACA Arachis hypogaea HOM05D000081 ORTHO05D000036 1.1e-16 89.4 62 72.6
arahy.Tifrunner.gnm1.ann1.SLD8K7 Arachis hypogaea HOM05D000081 ORTHO05D000036 4.2e-16 87.4 62 71.0
Glyma.04G115500 Glycine max HOM05D000081 ORTHO05D000036 5.5e-16 87.0 62 71.0
Lalb_Chr15g0079871 Lupinus albus HOM05D000081 ORTHO05D000036 6.1e-15 83.6 59 67.8
Ca_14126_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 3.0e-14 81.3 62 69.4
arahy.Tifrunner.gnm1.ann1.WGNZ2X Arachis hypogaea HOM05D000081 ORTHO05D000036 3.9e-14 80.9 62 67.7
Cpa.g.sc12.58 Carica papaya HOM05D000081 ORTHO05D000036 1.6e-12 75.5 60 61.7
Manes.01G007600 Manihot esculenta HOM05D000081 ORTHO05D000036 3.1e-11 71.2 60 60.0
TAR629G1661 Trochodendron aralioides HOM05D000081 ORTHO05D000036 4.1e-11 70.9 60 58.3
Hma1.2p1_0193F.1_g084400 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 6.9e-11 70.1 60 51.7
Dinv42531 Davidia involucrata HOM05D000081 ORTHO05D000036 2.0e-10 68.6 60 53.3
Manes.05G203900 Manihot esculenta HOM05D000081 ORTHO05D000036 3.4e-10 67.8 60 58.3
Haze_09922 Corylus avellana HOM05D000081 ORTHO05D000036 4.5e-10 67.4 60 53.3
TWI39G1194 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 5.9e-10 67.0 57 54.4
Sabra16G0321000 Salix brachista HOM05D000081 ORTHO05D000036 1.0e-09 66.2 59 54.2
Thecc.07G000700 Theobroma cacao HOM05D000081 ORTHO05D000036 1.0e-09 66.2 60 60.0
CANSAT11G1669 Cannabis sativa HOM05D000081 ORTHO05D000036 2.2e-09 65.1 58 55.2
DCAR_016808 Daucus carota HOM05D000081 ORTHO05D000036 2.2e-09 65.1 60 51.7
Dinv19637 Davidia involucrata HOM05D000081 ORTHO05D000036 2.2e-09 65.1 59 54.2
QL08p000375 Quercus lobata HOM05D000081 ORTHO05D000036 2.2e-09 65.1 59 55.9
Sabra11G0137500 Salix brachista HOM05D000081 ORTHO05D000036 2.2e-09 65.1 59 55.9
CSS0041811 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 3.8e-09 64.3 59 52.5
Duzib213G0494 Durio zibethinus HOM05D000081 ORTHO05D000036 3.8e-09 64.3 60 58.3
Sed0001427 Sechium edule HOM05D000081 ORTHO05D000036 6.5e-09 63.5 60 48.3
Cfa016968 Carpinus fangiana HOM05D000081 ORTHO05D000036 8.5e-09 63.2 60 48.3
Potri.011G169300 Populus trichocarpa HOM05D000081 ORTHO05D000036 8.5e-09 63.2 62 51.6
COL.COLO4_07795 Corchorus olitorius HOM05D000081 ORTHO05D000036 1.1e-08 62.8 60 55.0
TAR627G0177 Trochodendron aralioides HOM05D000081 ORTHO05D000036 1.1e-08 62.8 60 51.7
GSVIVG01014854001 Vitis vinifera HOM05D000081 ORTHO05D000036 1.4e-08 62.4 58 51.7
Potri.001G472800 Populus trichocarpa HOM05D000081 ORTHO05D000036 2.5e-08 61.6 59 52.5
PGR083G2605 Punica granatum HOM05D000081 ORTHO05D000036 9.4e-08 59.7 58 51.7
Oeu052021.2 Olea europaea HOM05D000081 ORTHO05D000036 1.2e-07 59.3 58 53.4
Actinidia03588 Actinidia chinensis HOM05D000081 ORTHO05D000036 1.6e-07 58.9 57 54.4
Duzib268G0222 Durio zibethinus HOM05D000081 ORTHO05D000036 1.6e-07 58.9 58 55.2
Oeu062668.1 Olea europaea HOM05D000081 ORTHO05D000036 2.7e-07 58.2 59 52.5
Eucgr.F01981 Eucalyptus grandis HOM05D000081 ORTHO05D000036 4.6e-07 57.4 61 52.5
Gohir.A08G026100 Gossypium hirsutum HOM05D000081 ORTHO05D000036 4.6e-07 57.4 61 57.4
Gohir.D08G036600 Gossypium hirsutum HOM05D000081 ORTHO05D000036 4.6e-07 57.4 61 57.4
Gorai.004G034600 Gossypium raimondii HOM05D000081 ORTHO05D000036 4.6e-07 57.4 61 57.4
Actinidia30343 Actinidia chinensis HOM05D000081 ORTHO05D000036 6.1e-07 57.0 57 52.6
Rhsim04G0007000 Rhododendron simsii HOM05D000081 ORTHO05D000036 6.1e-07 57.0 59 49.2
Sc03g0011820 Simmondsia chinensis HOM05D000081 ORTHO05D000036 6.1e-07 57.0 59 49.2
TAR626G1921 Trochodendron aralioides HOM05D000081 ORTHO05D000036 7.9e-07 56.6 60 48.3
Lsat_1_v5_gn_1_41240 Lactuca sativa HOM05D001433 ORTHO05D013129 1.4e-06 55.8 53 52.8
Lsat_1_v5_gn_4_100660 Lactuca sativa HOM05D000747 ORTHO05D000036 1.4e-06 55.8 53 52.8
Lsat_1_v5_gn_5_51100 Lactuca sativa HOM05D000747 ORTHO05D000036 1.4e-06 55.8 53 52.8
Lsat_1_v5_gn_7_115881 Lactuca sativa HOM05D000081 ORTHO05D000036 1.4e-06 55.8 53 52.8
Lsat_1_v5_gn_7_20821 Lactuca sativa HOM05D000081 ORTHO05D000036 1.4e-06 55.8 53 52.8
Lj8C184T7 Lonicera japonica HOM05D000081 ORTHO05D000036 1.4e-06 55.8 59 47.5
CAN.G623.79 Capsicum annuum HOM05D000081 ORTHO05D000036 2.3e-06 55.1 58 46.6
CARHR269670 Cardamine hirsuta HOM05D000081 ORTHO05D000036 2.3e-06 55.1 60 51.7
Lj1C902G5 Lonicera japonica HOM05D000081 ORTHO05D000036 2.3e-06 55.1 59 47.5
Prupe.6G036300 Prunus persica HOM05D000081 ORTHO05D000036 3.0e-06 54.7 59 55.9
FAN25G3806 Fragaria x ananassa HOM05D000081 ORTHO05D000036 3.9e-06 54.3 59 55.9
MD03G1044400 Malus domestica HOM05D000081 ORTHO05D000036 3.9e-06 54.3 59 55.9
FAN21G1723 Fragaria x ananassa HOM05D000081 ORTHO05D000036 5.1e-06 53.9 59 54.2
RcHm_v2.0_Chr5g0074411 Rosa chinensis HOM05D000081 ORTHO05D000036 5.1e-06 53.9 59 54.2
Sed0018136 Sechium edule HOM05D000081 ORTHO05D000036 5.1e-06 53.9 60 45.0
vmacro09795 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 5.1e-06 53.9 62 45.2
ECA236G1959 Erigeron canadensis HOM05D000081 ORTHO05D000036 6.7e-06 53.5 57 50.9
FvH4_3g41430 Fragaria vesca HOM05D000081 ORTHO05D000036 6.7e-06 53.5 59 55.9
FAN11G0082 Fragaria x ananassa HOM05D000081 ORTHO05D000036 6.7e-06 53.5 59 55.9
Nn1g07617 Nelumbo nucifera HOM05D000081 ORTHO05D000036 6.7e-06 53.5 62 45.2
Atru.chr2.3906 Acer truncatum HOM05D000081 ORTHO05D000036 8.8e-06 53.1 55 50.9
CSS0029789 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 8.8e-06 53.1 58 48.3
FAN16G2882 Fragaria x ananassa HOM05D000081 ORTHO05D000036 8.8e-06 53.1 59 54.2


User provided reference genes

Program Settings