Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30982 Trifolium pratense HOM05D003460 ORTHO05D004277 7.2e-30 133.3 68 100.0
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 8.8e-28 126.3 66 97.0
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 1.6e-24 115.5 66 86.4
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 5.9e-24 113.6 66 84.8
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 5.0e-23 110.5 61 91.8
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 1.4e-20 102.4 67 80.6
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 1.4e-20 102.4 67 80.6
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 5.2e-20 100.5 61 82.0
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 1.2e-19 99.4 62 83.9
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 2.6e-19 98.2 67 77.6
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 3.4e-19 97.8 62 83.9
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 4.4e-19 97.4 67 76.1
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 5.7e-19 97.1 67 74.6
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 7.5e-19 96.7 67 74.6
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 9.7e-19 96.3 58 84.5
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 1.7e-18 95.5 67 73.1
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 2.8e-18 94.7 67 76.1
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 6.3e-18 93.6 62 79.0
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 8.3e-18 93.2 67 71.6
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 1.1e-17 92.8 67 73.1
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 1.4e-17 92.4 67 71.6
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 2.4e-17 91.7 62 79.0
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 4.1e-17 90.9 67 71.6
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 2.0e-16 88.6 66 68.2
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 4.5e-16 87.4 62 66.1
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 4.5e-16 87.4 66 63.6
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 4.5e-16 87.4 67 68.7
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 5.9e-16 87.0 59 76.3
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 7.7e-16 86.7 61 72.1
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 1.0e-15 86.3 60 73.3
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 1.0e-15 86.3 67 59.7
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 1.3e-15 85.9 67 68.7
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 1.7e-15 85.5 65 66.2
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 1.7e-15 85.5 67 62.7
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 2.9e-15 84.7 62 66.1
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 2.9e-15 84.7 61 67.2
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 3.8e-15 84.3 66 60.6
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 6.5e-15 83.6 66 66.7
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 6.5e-15 83.6 66 66.7
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 8.5e-15 83.2 61 67.2
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 1.1e-14 82.8 66 63.6
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 1.1e-14 82.8 67 65.7
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 1.9e-14 82.0 65 64.6
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.9e-14 82.0 66 65.2
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 1.9e-14 82.0 66 60.6
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 2.5e-14 81.6 58 74.1
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 2.5e-14 81.6 67 62.7
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 2.5e-14 81.6 67 59.7
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 3.2e-14 81.3 61 65.6
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 3.2e-14 81.3 58 69.0
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 3.2e-14 81.3 66 59.1
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 4.2e-14 80.9 67 64.2
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 4.2e-14 80.9 67 64.2
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 4.2e-14 80.9 67 64.2
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 4.2e-14 80.9 67 59.7
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 4.2e-14 80.9 67 59.7
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 4.2e-14 80.9 60 66.7
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 4.2e-14 80.9 66 63.6
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 5.5e-14 80.5 63 68.3
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 7.2e-14 80.1 61 63.9
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 7.2e-14 80.1 67 58.2
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.2e-14 80.1 67 58.2
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.2e-14 80.1 67 58.2
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.2e-14 80.1 67 58.2
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.2e-14 80.1 67 58.2
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 7.2e-14 80.1 67 58.2
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 7.2e-14 80.1 59 69.5
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 7.2e-14 80.1 66 59.1
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 9.4e-14 79.7 66 62.1
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 9.4e-14 79.7 67 59.7
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 9.4e-14 79.7 61 63.9
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 9.4e-14 79.7 67 56.7
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 9.4e-14 79.7 66 63.6
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.2e-13 79.3 62 66.1
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 1.6e-13 79.0 67 64.2
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 1.6e-13 79.0 67 64.2
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.6e-13 79.0 67 58.2
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 2.1e-13 78.6 60 66.7
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.1e-13 78.6 62 64.5
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.1e-13 78.6 66 63.6
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.1e-13 78.6 62 64.5
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 2.1e-13 78.6 66 63.6
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 2.1e-13 78.6 62 64.5
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 2.7e-13 78.2 67 58.2
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 2.7e-13 78.2 59 66.1
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 3.6e-13 77.8 66 60.6
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 3.6e-13 77.8 63 63.5
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 3.6e-13 77.8 67 61.2
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 3.6e-13 77.8 66 60.6
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 3.6e-13 77.8 57 66.7
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 3.6e-13 77.8 59 66.1
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 4.7e-13 77.4 67 61.2
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 4.7e-13 77.4 67 61.2
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 4.7e-13 77.4 59 66.1
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 4.7e-13 77.4 60 63.3
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 4.7e-13 77.4 66 62.1
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 6.1e-13 77.0 67 58.2
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 6.1e-13 77.0 59 67.8
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 6.1e-13 77.0 59 67.8
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 8.0e-13 76.6 61 60.7
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 1.0e-12 76.3 67 59.7
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 1.0e-12 76.3 63 66.7
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 1.0e-12 76.3 63 63.5
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 1.0e-12 76.3 66 60.6
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 1.0e-12 76.3 67 59.7
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 1.4e-12 75.9 66 59.1
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 1.8e-12 75.5 67 61.2
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 1.8e-12 75.5 67 58.2
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 2.3e-12 75.1 66 57.6
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 3.0e-12 74.7 63 60.3
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 3.0e-12 74.7 62 64.5
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 4.0e-12 74.3 66 59.1
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 4.0e-12 74.3 60 61.7
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 4.0e-12 74.3 66 57.6
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 8.8e-12 73.2 67 59.7
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 8.8e-12 73.2 67 59.7
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 8.8e-12 73.2 67 59.7
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 8.8e-12 73.2 67 59.7
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 8.8e-12 73.2 67 59.7
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.2e-11 72.8 60 60.0
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 1.5e-11 72.4 63 57.1
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 2.0e-11 72.0 66 59.1
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 2.0e-11 72.0 66 57.6
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 4.4e-11 70.9 68 52.9
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 4.4e-11 70.9 66 59.1
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 5.7e-11 70.5 60 56.7
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 5.7e-11 70.5 62 58.1
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 7.5e-11 70.1 66 54.5
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 7.5e-11 70.1 67 58.2
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.2e-10 68.6 58 58.6
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 2.2e-10 68.6 60 60.0
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 2.2e-10 68.6 60 60.0
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.8e-10 68.2 59 57.6
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 2.8e-10 68.2 67 52.2
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.8e-10 68.2 67 61.2
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 3.7e-10 67.8 49 65.3
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 6.3e-10 67.0 66 53.0
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 8.3e-10 66.6 66 57.6
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.1e-09 66.2 59 57.6
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 4.1e-09 64.3 50 58.0
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 5.4e-09 63.9 51 62.7
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 2.0e-08 62.0 49 61.2
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 4.5e-08 60.8 50 60.0
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 4.5e-08 60.8 65 52.3
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 1.5e-06 55.8 65 47.7


User provided reference genes

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