Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30942 Trifolium pratense HOM05D005403 ORTHO05D006572 3.9e-60 234.6 116 100.0
Medtr1g080960 Medicago truncatula HOM05D005403 ORTHO05D006572 5.3e-41 171.0 92 87.0
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 1.4e-38 162.9 89 88.8
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 1.6e-37 159.5 92 82.6
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 7.9e-37 157.1 92 84.8
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 3.9e-36 154.8 92 82.6
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 5.1e-36 154.5 92 82.6
arahy.Tifrunner.gnm1.ann1.XU8J57 Arachis hypogaea HOM05D005403 ORTHO05D006572 8.8e-36 153.7 92 80.4
Migut.N01905 Erythranthe guttata HOM05D005403 ORTHO05D006572 3.7e-34 148.3 94 74.5
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 3.7e-34 148.3 93 77.4
Dinv05370 Davidia involucrata HOM05D005403 ORTHO05D006572 8.2e-34 147.1 92 76.1
Lalb_Chr06g0168031 Lupinus albus HOM05D005403 ORTHO05D006572 1.8e-33 146.0 93 77.4
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 1.8e-33 146.0 92 77.2
TAR362G0997 Trochodendron aralioides HOM05D005403 ORTHO05D006572 2.4e-33 145.6 92 75.0
AT3G04780 Arabidopsis thaliana HOM05D005403 ORTHO05D006572 4.1e-33 144.8 92 76.1
Carub.0003s0395 Capsella rubella HOM05D005403 ORTHO05D006572 4.1e-33 144.8 92 76.1
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 4.1e-33 144.8 92 75.0
AL3G14940 Arabidopsis lyrata HOM05D005403 ORTHO05D006572 5.3e-33 144.4 92 76.1
Dinv20864 Davidia involucrata HOM05D005403 ORTHO05D006572 5.3e-33 144.4 92 75.0
SGA_v2.0_scaffold80G25907 Striga asiatica HOM05D005403 ORTHO05D006572 5.3e-33 144.4 92 73.9
CiPaw.08G124800 Carya illinoinensis HOM05D005403 ORTHO05D006572 7.0e-33 144.1 92 72.8
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 7.0e-33 144.1 92 75.0
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 9.1e-33 143.7 92 75.0
CARHR079030 Cardamine hirsuta HOM05D005403 ORTHO05D006572 9.1e-33 143.7 92 75.0
QL03p025010 Quercus lobata HOM05D005403 ORTHO05D006572 9.1e-33 143.7 85 78.8
SGA_v2.0_scaffold81G26087 Striga asiatica HOM05D005403 ORTHO05D006572 9.1e-33 143.7 92 73.9
THA.LOC104818636 Tarenaya hassleriana HOM05D005403 ORTHO05D006572 9.1e-33 143.7 92 73.9
Ciclev10002653m.g Citrus clementina HOM05D005403 ORTHO05D006572 1.5e-32 142.9 92 73.9
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 1.5e-32 142.9 92 73.9
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 1.5e-32 142.9 92 73.9
Lsat_1_v5_gn_4_137100 Lactuca sativa HOM05D005403 ORTHO05D006572 1.5e-32 142.9 92 75.0
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 2.0e-32 142.5 92 72.8
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 2.0e-32 142.5 92 73.9
Sp3g03620 Schrenkiella parvula HOM05D005403 ORTHO05D006572 2.0e-32 142.5 92 75.0
TAR365G0414 Trochodendron aralioides HOM05D005403 ORTHO05D006572 2.0e-32 142.5 92 73.9
BcaB04g21347 Brassica carinata HOM05D005403 ORTHO05D006572 2.6e-32 142.1 92 75.0
BcaNung06422 Brassica carinata HOM05D005403 ORTHO05D006572 2.6e-32 142.1 92 75.0
C05p62500 Brassica napus HOM05D005403 ORTHO05D006572 2.6e-32 142.1 92 73.9
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 3.5e-32 141.7 92 75.0
Aa31LG5G15180 Aethionema arabicum HOM05D005403 ORTHO05D006572 3.5e-32 141.7 92 73.9
BNapus_Darmor_BZH_scaffold_78p01010 Brassica napus HOM05D005403 ORTHO05D006572 3.5e-32 141.7 92 73.9
BolC1t05726H Brassica oleracea HOM05D005403 ORTHO05D006572 3.5e-32 141.7 92 73.9
BraA01t04505Z Brassica rapa HOM05D005403 ORTHO05D006572 3.5e-32 141.7 92 73.9
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 4.5e-32 141.4 92 73.9
Duzib106G1152 Durio zibethinus HOM05D005403 ORTHO05D006572 4.5e-32 141.4 92 70.7
Thhalv10021632m.g Eutrema salsugineum HOM05D005403 ORTHO05D006572 4.5e-32 141.4 92 73.9
Gohir.A13G170400 Gossypium hirsutum HOM05D005403 ORTHO05D006572 4.5e-32 141.4 92 70.7
MD12G1238700 Malus domestica HOM05D005403 ORTHO05D006572 4.5e-32 141.4 92 72.8
CANSAT54G1830 Cannabis sativa HOM05D005403 ORTHO05D006572 7.7e-32 140.6 92 72.8
Prupe.6G341600 Prunus persica HOM05D005403 ORTHO05D006572 7.7e-32 140.6 92 73.9
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 1.0e-31 140.2 92 73.9
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 1.0e-31 140.2 92 72.8
Nitab4.5_0005582g0040 Nicotiana tabacum HOM05D005403 ORTHO05D006572 1.0e-31 140.2 92 72.8
PSO210G2729 Papaver somniferum HOM05D005403 ORTHO05D006572 1.0e-31 140.2 92 71.7
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 1.3e-31 139.8 92 71.7
Gohir.D13G175800 Gossypium hirsutum HOM05D005403 ORTHO05D006572 1.3e-31 139.8 92 69.6
Potri.005G052100 Populus trichocarpa HOM05D005403 ORTHO05D006572 1.3e-31 139.8 92 75.0
PSO832G0823 Papaver somniferum HOM05D005403 ORTHO05D006572 1.7e-31 139.4 92 70.7
Peaxi162Scf00282g00219 Petunia axillaris HOM05D005403 ORTHO05D006572 1.7e-31 139.4 92 71.7
Atru.chr2.798 Acer truncatum HOM05D005403 ORTHO05D006572 2.2e-31 139.0 92 67.4
Manes.09G153900 Manihot esculenta HOM05D005403 ORTHO05D006572 2.9e-31 138.7 92 70.7
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 2.9e-31 138.7 84 78.6
Sabra05G0045800 Salix brachista HOM05D005403 ORTHO05D006572 3.8e-31 138.3 92 75.0
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 3.8e-31 138.3 92 69.6
Gorai.013G201200 Gossypium raimondii HOM05D005403 ORTHO05D006572 5.0e-31 137.9 92 69.6
Nitab4.5_0004469g0080 Nicotiana tabacum HOM05D005403 ORTHO05D006572 5.0e-31 137.9 92 71.7
RcHm_v2.0_Chr3g0451391 Rosa chinensis HOM05D005403 ORTHO05D006572 5.0e-31 137.9 92 70.7
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 6.5e-31 137.5 92 70.7
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 6.5e-31 137.5 92 69.6
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 8.5e-31 137.1 94 70.2
Potri.013G039500 Populus trichocarpa HOM05D005403 ORTHO05D006572 8.5e-31 137.1 92 71.7
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 8.5e-31 137.1 92 67.4
CAN.G134.109 Capsicum annuum HOM05D005403 ORTHO05D006572 1.5e-30 136.3 92 71.7
Haze_04345 Corylus avellana HOM05D005403 ORTHO05D006572 1.5e-30 136.3 107 64.5
Sc09g0003870 Simmondsia chinensis HOM05D005403 ORTHO05D006572 1.9e-30 136.0 92 71.7
MBI11_g35357_MAGBIO Magnolia biondii HOM05D005403 ORTHO05D006572 2.5e-30 135.6 85 74.1
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 3.2e-30 135.2 92 68.5
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 3.2e-30 135.2 92 68.5
Sopen01g041120 Solanum pennellii HOM05D005403 ORTHO05D006572 7.2e-30 134.0 92 69.6
FvH4_6g03140 Fragaria vesca HOM05D005403 ORTHO05D006572 9.4e-30 133.7 92 68.5
FAN02G1200 Fragaria x ananassa HOM05D005403 ORTHO05D006572 9.4e-30 133.7 92 68.5
FAN09G2181 Fragaria x ananassa HOM05D005403 ORTHO05D006572 9.4e-30 133.7 92 68.5
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 1.2e-29 133.3 92 67.4
FAN05G1135 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.2e-29 133.3 92 68.5
FAN05G5291 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.2e-29 133.3 92 68.5
FAN14G0649 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.2e-29 133.3 92 67.4
PGR083G0704 Punica granatum HOM05D005403 ORTHO05D006572 1.2e-29 133.3 92 69.6
PGSC0003DMG400019449 Solanum tuberosum HOM05D005403 ORTHO05D006572 1.6e-29 132.9 92 69.6
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 2.7e-29 132.1 92 67.4
Cfa006448 Carpinus fangiana HOM05D005403 ORTHO05D006572 3.6e-29 131.7 79 74.7
unitig_21.g20052 Utricularia gibba HOM05D005403 ORTHO05D006572 3.6e-29 131.7 92 67.4
Sabra13G0036900 Salix brachista HOM05D005403 ORTHO05D006572 4.7e-29 131.3 92 70.7
Solyc01g097450.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 4.7e-29 131.3 92 68.5
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 6.1e-29 131.0 79 72.2
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 8.0e-29 130.6 92 65.2
Zm00001eb213000 Zea mays HOM05D005403 ORTHO05D006572 1.8e-28 129.4 90 62.2
DCAR_027617 Daucus carota HOM05D005403 ORTHO05D006572 2.3e-28 129.0 92 66.3
ATR0665G176 Amborella trichopoda HOM05D005403 ORTHO05D006572 3.9e-28 128.3 77 72.7
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 8.8e-28 127.1 92 68.5
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 8.8e-28 127.1 78 73.1
CAN.G141.8 Capsicum annuum HOM05D005403 ORTHO05D006572 1.5e-27 126.3 87 66.7
EL10Ac4g09116 Beta vulgaris HOM05D005403 ORTHO05D006572 2.6e-27 125.6 88 69.3
Os03g0795500 Oryza sativa ssp. japonica HOM05D005403 ORTHO05D006572 3.3e-27 125.2 85 63.5
Sed0002619 Sechium edule HOM05D005403 ORTHO05D006572 2.2e-26 122.5 88 60.2
Gohir.A11G253700 Gossypium hirsutum HOM05D005403 ORTHO05D006572 2.8e-26 122.1 78 71.8
Psat6g146440 Pisum sativum HOM05D005403 ORTHO05D006572 4.8e-26 121.3 92 70.7
SEGI_41475 Sequoiadendron giganteum HOM05D005403 ORTHO05D006572 3.1e-25 118.6 86 60.5
Pp3c5_6010 Physcomitrium patens HOM05D005403 ORTHO05D006572 7.0e-25 117.5 100 56.0
ClCG02G016540 Citrullus lanatus HOM05D005403 ORTHO05D006572 1.0e-23 113.6 88 58.0
MELO3C004371.2 Cucumis melo HOM05D005403 ORTHO05D006572 2.2e-23 112.5 88 56.8
Sed0000415 Sechium edule HOM05D005403 ORTHO05D006572 2.2e-23 112.5 88 58.0
CDE07G0028 Ceratophyllum demersum HOM05D005403 ORTHO05D006572 2.9e-23 112.1 87 62.1
CDE06G0313 Ceratophyllum demersum HOM05D005403 ORTHO05D006572 3.8e-23 111.7 120 50.0
CBR_g8269 Chara braunii HOM05D005403 ORTHO05D006572 1.1e-22 110.2 76 64.5
CsaV3_2G004230 Cucumis sativus L. HOM05D005403 ORTHO05D006572 1.1e-22 110.2 84 58.3
SMO340G0197 Selaginella moellendorffii HOM05D005403 ORTHO05D006572 3.2e-22 108.6 80 58.8
Rhsim10G0108600 Rhododendron simsii HOM05D005403 ORTHO05D006572 7.2e-22 107.5 151 43.7
AagrBONN_evm.TU.Sc2ySwM_344.2056 Anthoceros agrestis HOM05D005403 ORTHO05D006572 1.2e-21 106.7 78 60.3
Mapoly0034s0051 Marchantia polymorpha HOM05D005403 ORTHO05D006572 1.8e-20 102.8 87 50.6
Sopen04g005140 Solanum pennellii HOM05D005403 ORTHO05D006572 9.7e-19 97.1 97 48.5
Gohir.D11G263600 Gossypium hirsutum HOM05D005403 ORTHO05D006572 1.7e-18 96.3 92 52.2
Pp3c6_27050 Physcomitrium patens HOM05D005403 ORTHO05D006572 6.3e-18 94.4 138 39.1
PGSC0003DMG400011476 Solanum tuberosum HOM05D005403 ORTHO05D006572 9.1e-17 90.5 92 46.7
Solyc04g010010.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 1.2e-16 90.1 87 49.4
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 3.5e-16 88.6 84 48.8
Solyc04g010030.1 Solanum lycopersicum HOM05D005403 ORTHO05D006572 1.9e-14 82.8 79 51.9
Sopen04g005160 Solanum pennellii HOM05D005403 ORTHO05D006572 1.9e-14 82.8 79 51.9
vmacro05240 Vaccinium macrocarpon HOM05D005403 ORTHO05D006572 1.6e-13 79.7 201 30.8
Lj7A489G21 Lonicera japonica HOM05D005403 ORTHO05D006572 3.6e-13 78.6 50 72.0
MCO08G264 Micromonas commoda HOM05D005403 ORTHO05D006572 8.0e-13 77.4 70 50.0
Zm00001eb060640 Zea mays HOM05D005403 ORTHO05D006572 4.0e-12 75.1 88 43.2
Cre17.g730250 Chlamydomonas reinhardtii HOM05D005403 ORTHO05D006572 6.8e-12 74.3 68 47.1
Gorai.007G283600 Gossypium raimondii HOM05D005403 ORTHO05D006572 4.8e-10 68.2 48 62.5
Cc02_g31890 Coffea canephora HOM05D005403 ORTHO05D006572 1.8e-09 66.2 43 72.1
Haze_27143 Corylus avellana HOM05D005403 ORTHO05D006572 2.4e-09 65.9 93 35.5
Pp3s396_10 Physcomitrium patens HOM05D050862 ORTHO05D006572 4.1e-09 65.1 95 35.8
CSS0036106 Camellia sinensis var. sinensis HOM05D005403 ORTHO05D006572 3.3e-06 55.5 44 59.1
DCAR_011699 Daucus carota HOM05D005403 ORTHO05D006572 3.3e-06 55.5 38 57.9


User provided reference genes

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