Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 3.2e-29 131.0 61 100.0
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 9.3e-29 129.4 61 96.7
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.2e-28 129.0 61 96.7
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.1e-28 128.3 61 95.1
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.7e-28 127.9 61 95.1
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 2.7e-28 127.9 61 95.1
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 2.7e-28 127.9 60 96.7
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.5e-28 127.5 61 95.1
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 3.5e-28 127.5 61 96.7
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 3.5e-28 127.5 61 96.7
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 3.5e-28 127.5 61 95.1
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.6e-28 127.1 61 91.8
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 4.6e-28 127.1 61 95.1
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 4.6e-28 127.1 61 95.1
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.0e-28 126.7 61 95.1
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 7.9e-28 126.3 61 93.4
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.0e-27 125.9 61 93.4
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.3e-27 125.6 61 93.4
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.3e-27 125.6 61 93.4
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.8e-27 125.2 61 93.4
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.8e-27 125.2 61 95.1
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 1.8e-27 125.2 61 91.8
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.8e-27 125.2 61 91.8
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.3e-27 124.8 61 90.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.3e-27 124.8 61 91.8
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.3e-27 124.8 61 91.8
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.3e-27 124.8 61 91.8
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 2.3e-27 124.8 61 91.8
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.0e-27 124.4 61 93.4
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.0e-27 124.4 61 90.2
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 3.0e-27 124.4 60 95.0
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 3.9e-27 124.0 60 91.7
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.9e-27 124.0 61 91.8
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 3.9e-27 124.0 60 91.7
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 3.9e-27 124.0 61 90.2
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 5.1e-27 123.6 61 90.2
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 5.1e-27 123.6 61 90.2
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 5.1e-27 123.6 61 91.8
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 6.7e-27 123.2 61 91.8
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 6.7e-27 123.2 61 91.8
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 8.7e-27 122.9 61 91.8
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 8.7e-27 122.9 61 91.8
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 8.7e-27 122.9 61 91.8
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 8.7e-27 122.9 61 91.8
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 8.7e-27 122.9 61 91.8
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 8.7e-27 122.9 60 93.3
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.1e-26 122.5 61 91.8
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.1e-26 122.5 61 91.8
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.1e-26 122.5 61 88.5
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.1e-26 122.5 61 90.2
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-26 122.5 60 90.0
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.1e-26 122.5 61 91.8
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.1e-26 122.5 61 91.8
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.1e-26 122.5 61 90.2
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.5e-26 122.1 61 91.8
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.5e-26 122.1 61 90.2
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.9e-26 121.7 61 90.2
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.9e-26 121.7 61 90.2
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.9e-26 121.7 61 90.2
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.9e-26 121.7 61 90.2
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.9e-26 121.7 60 88.3
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.9e-26 121.7 60 88.3
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.9e-26 121.7 61 88.5
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.5e-26 121.3 61 90.2
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.5e-26 121.3 61 90.2
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 2.5e-26 121.3 61 90.2
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 2.5e-26 121.3 61 90.2
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.5e-26 121.3 61 90.2
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.5e-26 121.3 60 88.3
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 2.5e-26 121.3 61 88.5
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 2.5e-26 121.3 61 91.8
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 3.3e-26 120.9 61 88.5
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.3e-26 120.9 61 88.5
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 4.3e-26 120.6 61 88.5
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 4.3e-26 120.6 61 88.5
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 4.3e-26 120.6 60 90.0
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 4.3e-26 120.6 61 90.2
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 5.7e-26 120.2 60 88.3
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 5.7e-26 120.2 61 88.5
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 5.7e-26 120.2 60 88.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 5.7e-26 120.2 61 90.2
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 5.7e-26 120.2 61 90.2
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 7.4e-26 119.8 61 90.2
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 7.4e-26 119.8 61 88.5
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 7.4e-26 119.8 61 86.9
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 7.4e-26 119.8 61 88.5
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 7.4e-26 119.8 60 86.7
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 7.4e-26 119.8 61 90.2
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 9.6e-26 119.4 60 86.7
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 9.6e-26 119.4 61 88.5
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 9.6e-26 119.4 61 86.9
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 9.6e-26 119.4 60 86.7
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.3e-25 119.0 61 88.5
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.3e-25 119.0 61 88.5
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.3e-25 119.0 61 90.2
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 1.3e-25 119.0 60 88.3
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.3e-25 119.0 61 90.2
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 2.1e-25 118.2 61 86.9
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.1e-25 118.2 61 85.2
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.1e-25 118.2 61 86.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 2.8e-25 117.9 61 88.5
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 2.8e-25 117.9 61 86.9
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.8e-25 117.9 60 88.3
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 3.7e-25 117.5 61 88.5
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 3.7e-25 117.5 61 86.9
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 4.8e-25 117.1 61 86.9
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 4.8e-25 117.1 61 85.2
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 4.8e-25 117.1 60 86.7
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.8e-25 117.1 61 85.2
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.8e-25 117.1 61 85.2
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 6.3e-25 116.7 61 85.2
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 6.3e-25 116.7 61 85.2
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 6.3e-25 116.7 60 85.0
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 8.2e-25 116.3 61 86.9
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 8.2e-25 116.3 60 88.3
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.4e-24 115.5 61 83.6
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.4e-24 115.5 60 85.0
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.4e-24 115.5 61 85.2
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.4e-24 114.8 61 82.0
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.1e-24 114.4 56 89.3
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.1e-24 114.0 59 88.1
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 5.3e-24 113.6 61 88.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 5.3e-24 113.6 61 88.5
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 6.9e-24 113.2 61 86.9
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 9.0e-24 112.8 61 82.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.0e-23 111.7 61 82.0
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 4.5e-23 110.5 61 80.3
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.9e-22 107.8 60 76.7
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 5.0e-22 107.1 60 78.3
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 6.5e-22 106.7 60 80.0
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 5.5e-21 103.6 57 80.7
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 7.2e-21 103.2 51 90.2
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.1e-20 101.7 60 73.3
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.7e-20 101.3 61 83.6
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 5.1e-19 97.1 59 69.5
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-18 95.9 45 93.3
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 2.2e-17 91.7 59 69.5
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.9e-13 78.6 60 58.3
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.7e-12 74.7 42 81.0
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.4e-11 72.4 60 53.3
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 8.8e-11 69.7 39 76.9
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.8e-09 64.7 29 100.0
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 4.8e-09 63.9 34 85.3
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 2.4e-08 61.6 29 93.1
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 5.3e-08 60.5 60 50.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.0e-06 53.9 25 92.0


User provided reference genes

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