Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30866 Trifolium pratense HOM05D000279 ORTHO05D034589 4.2e-81 304.7 158 100.0
Medtr2g034780 Medicago truncatula HOM05D000279 ORTHO05D034589 4.7e-56 221.5 149 75.2
arahy.Tifrunner.gnm1.ann1.CQA1YI Arachis hypogaea HOM05D000279 ORTHO05D000498 1.3e-13 80.5 139 41.7
arahy.Tifrunner.gnm1.ann1.ETPV4R Arachis hypogaea HOM05D000279 ORTHO05D000498 1.3e-13 80.5 148 39.2
FvH4_2g03601 Fragaria vesca HOM05D000366 ORTHO05D000498 4.3e-09 65.5 42 64.3
FAN24G2003 Fragaria x ananassa HOM05D000279 ORTHO05D000498 4.3e-09 65.5 42 64.3
MD07G1085400 Malus domestica HOM05D000279 ORTHO05D000498 4.3e-09 65.5 42 66.7
MD07G1051100 Malus domestica HOM05D000279 ORTHO05D000498 9.5e-09 64.3 64 50.0
Prupe.2G052500 Prunus persica HOM05D000279 ORTHO05D000498 1.2e-08 63.9 88 43.2
MD00G1065000 Malus domestica HOM05D000279 ORTHO05D000498 2.1e-08 63.2 42 64.3
MD07G1051000 Malus domestica HOM05D000279 ORTHO05D000498 2.1e-08 63.2 42 64.3
MD00G1065300 Malus domestica HOM05D000279 ORTHO05D000498 2.8e-08 62.8 64 50.0
RcHm_v2.0_Chr6g0252621 Rosa chinensis HOM05D000366 ORTHO05D000437 2.8e-08 62.8 42 64.3
MD07G1085500 Malus domestica HOM05D000279 ORTHO05D000498 3.6e-08 62.4 42 61.9
RcHm_v2.0_Chr6g0252611 Rosa chinensis HOM05D000366 ORTHO05D000437 4.7e-08 62.0 42 59.5
FAN20G0706 Fragaria x ananassa HOM05D000279 ORTHO05D000498 8.1e-08 61.2 90 40.0
MD02G1268400 Malus domestica HOM05D000279 ORTHO05D000498 8.1e-08 61.2 42 59.5
MD07G1051300 Malus domestica HOM05D000279 ORTHO05D000498 1.1e-07 60.8 57 49.1
Lj5g0022331 Lotus japonicus HOM05D000279 ORTHO05D000498 1.4e-07 60.5 85 35.3
RcHm_v2.0_Chr1g0330141 Rosa chinensis HOM05D000279 ORTHO05D000498 1.8e-07 60.1 60 48.3
TPR.G438 Trifolium pratense HOM05D000279 ORTHO05D000498 1.8e-07 60.1 42 57.1
MD02G1268500 Malus domestica HOM05D000279 ORTHO05D000498 3.1e-07 59.3 42 59.5
arahy.Tifrunner.gnm1.ann1.JJX8CS Arachis hypogaea HOM05D000279 ORTHO05D000498 4.0e-07 58.9 42 54.8
FAN15G0969 Fragaria x ananassa HOM05D000366 ORTHO05D000498 4.0e-07 58.9 36 63.9
RcHm_v2.0_Chr1g0330151 Rosa chinensis HOM05D000279 ORTHO05D000498 4.0e-07 58.9 60 48.3
FAN06G0166 Fragaria x ananassa HOM05D000279 ORTHO05D000498 5.2e-07 58.5 58 50.0
RcHm_v2.0_Chr1g0330121 Rosa chinensis HOM05D000279 ORTHO05D000498 5.2e-07 58.5 58 50.0
FvH4_7g04760 Fragaria vesca HOM05D000279 ORTHO05D000498 6.8e-07 58.2 86 44.2
FAN01G2354 Fragaria x ananassa HOM05D000279 ORTHO05D000498 6.8e-07 58.2 73 43.8
FAN06G1972 Fragaria x ananassa HOM05D000279 ORTHO05D000498 6.8e-07 58.2 86 44.2
RcHm_v2.0_Chr1g0330191 Rosa chinensis HOM05D000279 ORTHO05D000498 6.8e-07 58.2 60 48.3
FvH4_2g03600 Fragaria vesca HOM05D000366 ORTHO05D000498 8.9e-07 57.8 36 63.9
FvH4_7g04750 Fragaria vesca HOM05D000279 ORTHO05D000498 1.2e-06 57.4 91 39.6
FAN06G2560 Fragaria x ananassa HOM05D000279 ORTHO05D000498 1.2e-06 57.4 91 39.6
Lj6g0016290 Lotus japonicus HOM05D000279 ORTHO05D000498 1.2e-06 57.4 35 62.9
Lalb_Chr02g0154011 Lupinus albus HOM05D000279 ORTHO05D000498 1.2e-06 57.4 42 57.1
Psat0s1122g0160 Pisum sativum HOM05D000279 ORTHO05D000498 1.2e-06 57.4 42 52.4
FAN03G1959 Fragaria x ananassa HOM05D000279 ORTHO05D000498 1.5e-06 57.0 73 42.5
FAN10G2440 Fragaria x ananassa HOM05D000279 ORTHO05D000498 1.5e-06 57.0 91 40.7
VMungo0331G0088 Vigna mungo HOM05D000006 ORTHO05D000001 1.5e-06 57.0 57 47.4
Medtr7g107200 Medicago truncatula HOM05D000279 ORTHO05D000498 2.0e-06 56.6 42 54.8
Prupe.2G052600 Prunus persica HOM05D000279 ORTHO05D000498 2.0e-06 56.6 35 62.9
FAN18G1787 Fragaria x ananassa HOM05D000279 ORTHO05D000498 2.6e-06 56.2 42 52.4
Lj6g0007434 Lotus japonicus HOM05D000279 ORTHO05D000498 2.6e-06 56.2 35 57.1
Phvul.007G264600 Phaseolus vulgaris HOM05D000279 ORTHO05D000498 2.6e-06 56.2 80 37.5
RcHm_v2.0_Chr1g0330181 Rosa chinensis HOM05D000279 ORTHO05D000498 2.6e-06 56.2 85 40.0
Lj1g0010305 Lotus japonicus HOM05D006729 ORTHO05D008502 3.4e-06 55.8 42 54.8
Lj5g0001153 Lotus japonicus HOM05D000279 ORTHO05D000498 3.4e-06 55.8 37 64.9
Ca_09092_v3 Cicer arietinum L. HOM05D000279 ORTHO05D000498 4.4e-06 55.5 42 54.8
Lalb_Chr02g0154001 Lupinus albus HOM05D000279 ORTHO05D000498 4.4e-06 55.5 42 54.8
MD11G1209800 Malus domestica HOM05D000279 ORTHO05D000498 4.4e-06 55.5 42 54.8
Psat0s1122g0200 Pisum sativum HOM05D000279 ORTHO05D000498 4.4e-06 55.5 80 35.0
FvH4_7g04741 Fragaria vesca HOM05D000279 ORTHO05D000498 5.8e-06 55.1 86 41.9
RcHm_v2.0_Chr5g0041491 Rosa chinensis HOM05D000279 ORTHO05D000498 5.8e-06 55.1 42 54.8
TPR.G32291 Trifolium pratense HOM05D000279 ORTHO05D000498 5.8e-06 55.1 42 54.8
TPR.G32309 Trifolium pratense HOM05D000279 ORTHO05D000498 5.8e-06 55.1 42 52.4
FvH4_5g29370 Fragaria vesca HOM05D000660 ORTHO05D000498 7.6e-06 54.7 42 54.8
TPR.G29363 Trifolium pratense HOM05D000279 ORTHO05D000498 7.6e-06 54.7 44 54.5


User provided reference genes

Program Settings