Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30859 Trifolium pratense HOM05D009148 ORTHO05D412805 2.8e-163 578.6 296 100.0
TPR.G1491 Trifolium pratense HOM05D009148 ORTHO05D002335 1.8e-16 90.9 166 41.0
Psat6g162920 Pisum sativum HOM05D002771 ORTHO05D003078 1.4e-13 81.3 42 88.1
TPR.G19776 Trifolium pratense HOM05D002771 ORTHO05D003078 7.0e-13 79.0 42 88.1
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 1.6e-12 77.8 42 81.0
Medtr3g080680 Medicago truncatula HOM05D009148 ORTHO05D011895 4.5e-12 76.3 153 38.6
Haze_05001 Corylus avellana HOM05D002771 ORTHO05D003078 5.9e-12 75.9 43 74.4
GSVIVG01028080001 Vitis vinifera HOM05D002771 ORTHO05D003078 5.9e-12 75.9 42 73.8
arahy.Tifrunner.gnm1.ann1.P2THLI Arachis hypogaea HOM05D002771 ORTHO05D003078 7.8e-12 75.5 42 78.6
Medtr1g087760 Medicago truncatula HOM05D002771 ORTHO05D003078 7.8e-12 75.5 42 83.3
VMungo0720G2009 Vigna mungo HOM05D002771 ORTHO05D003078 7.8e-12 75.5 42 78.6
Cfa005847 Carpinus fangiana HOM05D001134 ORTHO05D003078 1.0e-11 75.1 42 76.2
Phvul.007G216600 Phaseolus vulgaris HOM05D002771 ORTHO05D003078 1.0e-11 75.1 42 78.6
Lj5g0017537 Lotus japonicus HOM05D002771 ORTHO05D003078 2.9e-11 73.6 42 81.0
Manes.01G225000 Manihot esculenta HOM05D002771 ORTHO05D003078 2.9e-11 73.6 42 71.4
arahy.Tifrunner.gnm1.ann1.IEN2V4 Arachis hypogaea HOM05D002771 ORTHO05D003078 3.8e-11 73.2 42 76.2
Duzib138G1237 Durio zibethinus HOM05D002771 ORTHO05D003078 3.8e-11 73.2 42 73.8
Glyma.02G014800 Glycine max HOM05D002771 ORTHO05D003078 3.8e-11 73.2 42 76.2
CiPaw.07G114500 Carya illinoinensis HOM05D002771 ORTHO05D003078 6.6e-11 72.4 42 71.4
Sabra14G0092200 Salix brachista HOM05D002771 ORTHO05D003078 6.6e-11 72.4 42 73.8
Actinidia25833 Actinidia chinensis HOM05D002771 ORTHO05D003078 8.6e-11 72.0 42 66.7
QL12p028883 Quercus lobata HOM05D002771 ORTHO05D003078 8.6e-11 72.0 42 71.4
QL93p0218_0005 Quercus lobata HOM05D002771 ORTHO05D003078 8.6e-11 72.0 42 71.4
Rhsim01G0288900 Rhododendron simsii HOM05D002771 ORTHO05D003078 1.1e-10 71.6 42 69.0
CSS0003589 Camellia sinensis var. sinensis HOM05D002771 ORTHO05D003078 1.9e-10 70.9 42 69.0
Cpa.g.sc151.54 Carica papaya HOM05D002771 ORTHO05D003078 1.9e-10 70.9 42 71.4
Hund18252 Selenicereus undatus HOM05D002771 ORTHO05D003078 1.9e-10 70.9 42 66.7
vmacro15125 Vaccinium macrocarpon HOM05D002771 ORTHO05D003078 1.9e-10 70.9 42 66.7
Ah.15g092740 Amaranthus hybridus HOM05D002771 ORTHO05D003078 2.5e-10 70.5 42 66.7
TAR633G1619 Trochodendron aralioides HOM05D002771 ORTHO05D003078 2.5e-10 70.5 42 71.4
Atru.chr5.1061 Acer truncatum HOM05D002771 ORTHO05D003078 3.3e-10 70.1 42 69.0
Lj1A20T48 Lonicera japonica HOM05D002771 ORTHO05D003078 3.3e-10 70.1 42 69.0
CSS0024164 Camellia sinensis var. sinensis HOM05D002771 ORTHO05D003078 4.3e-10 69.7 42 69.0
Eucgr.F04446 Eucalyptus grandis HOM05D002771 ORTHO05D003078 5.6e-10 69.3 42 69.0
Dinv33096 Davidia involucrata HOM05D002771 ORTHO05D003078 7.3e-10 68.9 42 69.0
Sed0005010 Sechium edule HOM05D002771 ORTHO05D003078 7.3e-10 68.9 42 66.7
EL10Ac7g17655 Beta vulgaris HOM05D002771 ORTHO05D003078 9.5e-10 68.6 42 66.7
AUR62025469 Chenopodium quinoa HOM05D002771 ORTHO05D003078 9.5e-10 68.6 42 69.0
HanXRQChr06g0167801 Helianthus annuus HOM05D002771 ORTHO05D003078 9.5e-10 68.6 42 69.0
MD11G1317900 Malus domestica HOM05D002771 ORTHO05D003078 1.2e-09 68.2 42 66.7
DCAR_012361 Daucus carota HOM05D002771 ORTHO05D003078 1.6e-09 67.8 42 64.3
Migut.D00106 Erythranthe guttata HOM05D002771 ORTHO05D003078 1.6e-09 67.8 42 66.7
Nitab4.5_0008750g0030 Nicotiana tabacum HOM05D002771 ORTHO05D003078 1.6e-09 67.8 42 61.9
PGR031G2885 Punica granatum HOM05D002771 ORTHO05D003078 1.6e-09 67.8 42 66.7
Thecc.01G309100 Theobroma cacao HOM05D002771 ORTHO05D003078 1.6e-09 67.8 42 71.4
Eucgr.F04439 Eucalyptus grandis HOM05D002771 ORTHO05D003078 2.1e-09 67.4 42 64.3
ClCG09G005300 Citrullus lanatus HOM05D002771 ORTHO05D003078 2.8e-09 67.0 42 66.7
Medtr3g082420 Medicago truncatula HOM05D009148 ORTHO05D011895 2.8e-09 67.0 248 30.2
PGSC0003DMG400024037 Solanum tuberosum HOM05D002771 ORTHO05D003078 2.8e-09 67.0 42 64.3
RcHm_v2.0_Chr7g0241961 Rosa chinensis HOM05D002771 ORTHO05D003078 3.6e-09 66.6 42 66.7
Eucgr.F04444 Eucalyptus grandis HOM05D002771 ORTHO05D003078 4.7e-09 66.2 42 66.7
CANSAT25G0283 Cannabis sativa HOM05D002771 ORTHO05D003078 6.1e-09 65.9 42 64.3
FAN18G1026 Fragaria x ananassa HOM05D002771 ORTHO05D003078 6.1e-09 65.9 42 66.7
FAN18G3442 Fragaria x ananassa HOM05D002771 ORTHO05D003078 6.1e-09 65.9 42 66.7
Medtr3g082340 Medicago truncatula HOM05D009148 ORTHO05D011895 6.1e-09 65.9 165 34.5
Nitab4.5_0006939g0010 Nicotiana tabacum HOM05D002771 ORTHO05D003078 6.1e-09 65.9 42 61.9
AUR62008770 Chenopodium quinoa HOM05D002771 ORTHO05D003078 8.0e-09 65.5 41 65.9
COL.COLO4_23274 Corchorus olitorius HOM05D002771 ORTHO05D003078 8.0e-09 65.5 42 66.7
FvH4_5g39650 Fragaria vesca HOM05D002771 ORTHO05D003078 8.0e-09 65.5 42 64.3
FAN08G3574 Fragaria x ananassa HOM05D002771 ORTHO05D003078 8.0e-09 65.5 42 64.3
AUR62008769 Chenopodium quinoa HOM05D002771 ORTHO05D003078 1.0e-08 65.1 42 64.3
CsaV3_7G029770 Cucumis sativus L. HOM05D002771 ORTHO05D003078 1.0e-08 65.1 42 61.9
Gohir.D09G216400 Gossypium hirsutum HOM05D002771 ORTHO05D003078 1.4e-08 64.7 42 64.3
Gorai.006G236900 Gossypium raimondii HOM05D002771 ORTHO05D003078 1.4e-08 64.7 42 64.3
MELO3C015944.2 Cucumis melo HOM05D002771 ORTHO05D003078 2.3e-08 63.9 42 59.5
MBI18_g24957_MAGBIO Magnolia biondii HOM05D002771 ORTHO05D003078 2.3e-08 63.9 42 64.3
SGA_v2.0_scaffold334G49049 Striga asiatica HOM05D002771 ORTHO05D003078 2.3e-08 63.9 42 61.9
ATR0706G227 Amborella trichopoda HOM05D002771 ORTHO05D003078 3.0e-08 63.5 42 59.5
AUR62025468 Chenopodium quinoa HOM05D002771 ORTHO05D003078 3.0e-08 63.5 42 64.3
TPR.G563 Trifolium pratense HOM05D009148 ORTHO05D412901 3.0e-08 63.5 161 35.4
CAN.G1209.21 Capsicum annuum HOM05D002771 ORTHO05D003078 4.0e-08 63.2 42 64.3
TWI36G1696 Tripterygium wilfordii HOM05D002771 ORTHO05D003078 4.0e-08 63.2 42 59.5
Cc07_g15250 Coffea canephora HOM05D002771 ORTHO05D003078 5.2e-08 62.8 42 61.9
Gohir.A09G213900 Gossypium hirsutum HOM05D002771 ORTHO05D003078 5.2e-08 62.8 42 61.9
Os10g0484700 Oryza sativa ssp. japonica HOM05D002771 ORTHO05D003078 8.9e-08 62.0 42 64.3
Nn4g25667 Nelumbo nucifera HOM05D002771 ORTHO05D003078 1.2e-07 61.6 42 64.3
Prupe.8G269100 Prunus persica HOM05D002771 ORTHO05D003078 1.5e-07 61.2 40 62.5
Oeu008444.1 Olea europaea HOM05D002771 ORTHO05D003078 2.0e-07 60.8 42 59.5
Zm00001eb221410 Zea mays HOM05D002771 ORTHO05D003078 2.6e-07 60.5 42 64.3
Sc24g0003710 Simmondsia chinensis HOM05D002771 ORTHO05D003078 3.4e-07 60.1 42 57.1
CDE06G1056 Ceratophyllum demersum HOM05D002771 ORTHO05D003078 1.3e-06 58.2 42 57.1


User provided reference genes

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