Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3084 Trifolium pratense HOM05D002002 ORTHO05D012248 1.2e-98 363.2 185 100.0
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 1.5e-50 203.4 113 92.0
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 4.4e-37 158.7 113 77.9
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 2.5e-32 142.9 113 73.5
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 2.3e-30 136.3 122 63.9
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 2.6e-29 132.9 123 65.9
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 6.3e-28 128.3 123 64.2
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 2.4e-27 126.3 123 62.6
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 5.3e-27 125.2 116 64.7
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 9.1e-27 124.4 144 58.3
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 9.1e-27 124.4 144 58.3
TPR.G24664 Trifolium pratense HOM05D002002 ORTHO05D008797 2.9e-25 119.4 86 77.9
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 8.8e-22 107.8 123 56.1
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.8e-19 100.1 111 51.4
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 5.0e-17 92.0 113 50.4
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 1.1e-16 90.9 114 48.2
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 1.1e-16 90.9 114 48.2
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 1.1e-16 90.9 114 48.2
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 2.5e-16 89.7 111 52.3
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 7.2e-16 88.2 112 48.2
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 9.4e-16 87.8 96 55.2
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.2e-15 87.4 110 51.8
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 1.6e-15 87.0 116 49.1
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.6e-15 87.0 111 49.5
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 3.6e-15 85.9 114 46.5
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 8.0e-15 84.7 138 41.3
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 3.0e-14 82.8 111 51.4
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 3.0e-14 82.8 104 47.1
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 4.0e-14 82.4 107 51.4
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 5.2e-14 82.0 102 52.0
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 5.2e-14 82.0 151 37.7
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 1.2e-13 80.9 108 47.2
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 1.5e-13 80.5 109 49.5
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 2.6e-13 79.7 109 48.6
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 7.5e-13 78.2 109 47.7
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 7.5e-13 78.2 122 43.4
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 1.3e-12 77.4 121 45.5
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 1.3e-12 77.4 114 43.9
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 1.3e-12 77.4 110 47.3
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 2.8e-12 76.3 131 38.2
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 2.8e-12 76.3 116 44.0
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 3.7e-12 75.9 112 44.6
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 3.7e-12 75.9 107 43.0
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 6.3e-12 75.1 107 44.9
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 8.3e-12 74.7 112 43.8
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 8.3e-12 74.7 97 47.4
SHI19582 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-10 70.5 71 57.7
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 2.0e-10 70.1 96 49.0
SHI06465 Sapria himalayana HOM05D016041 ORTHO05D012248 2.0e-10 70.1 71 57.7
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 4.5e-10 68.9 98 50.0
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 4.5e-10 68.9 118 39.8
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 5.9e-10 68.6 105 41.9
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 7.7e-10 68.2 97 44.3
RcHm_v2.0_Chr6g0307111 Rosa chinensis HOM05D016041 ORTHO05D012248 1.0e-09 67.8 60 61.7
VMungo1127G1886 Vigna mungo HOM05D019972 ORTHO05D021033 1.0e-09 67.8 76 53.9
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 1.7e-09 67.0 110 45.5
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 2.3e-09 66.6 106 45.3
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 2.3e-09 66.6 115 39.1
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 2.3e-09 66.6 125 42.4
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 2.3e-09 66.6 112 42.0
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 2.9e-09 66.2 102 47.1
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 2.9e-09 66.2 152 32.2
VMungo1215G2544 Vigna mungo HOM05D002002 ORTHO05D021033 2.9e-09 66.2 47 74.5
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 3.8e-09 65.9 102 45.1
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 3.8e-09 65.9 93 44.1
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 3.8e-09 65.9 116 41.4
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 3.8e-09 65.9 111 39.6
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 8.6e-09 64.7 110 44.5
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 1.1e-08 64.3 152 31.6
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 1.1e-08 64.3 121 38.0
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 1.1e-08 64.3 119 37.0
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.9e-08 63.5 104 42.3
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 1.9e-08 63.5 108 38.0
RcHm_v2.0_Chr1g0341921 Rosa chinensis HOM05D016041 ORTHO05D012248 1.9e-08 63.5 58 58.6
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 1.9e-08 63.5 111 38.7
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 2.5e-08 63.2 112 37.5
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 3.2e-08 62.8 138 40.6
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.6e-07 60.5 105 42.9
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 1.6e-07 60.5 106 37.7
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 1.6e-07 60.5 99 40.4
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 3.6e-07 59.3 121 40.5
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 3.6e-07 59.3 102 38.2
RcHm_v2.0_Chr7g0243261 Rosa chinensis HOM05D016041 ORTHO05D012248 4.7e-07 58.9 59 57.6
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 4.7e-07 58.9 50 64.0
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 6.1e-07 58.5 62 54.8
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 2.3e-06 56.6 116 37.9
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 2.3e-06 56.6 97 40.2
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 3.0e-06 56.2 113 38.1
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 5.2e-06 55.5 122 36.1
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 5.2e-06 55.5 118 38.1
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 6.8e-06 55.1 97 42.3
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 6.8e-06 55.1 111 36.9
Oeu059320.1 Olea europaea HOM05D016041 ORTHO05D012248 6.8e-06 55.1 54 55.6


User provided reference genes

Program Settings