Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 0.0e+00 1458.7 772 100.0
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 0.0e+00 1139.8 776 79.5
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 0.0e+00 1117.4 760 81.6
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 0.0e+00 1087.4 757 78.2
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 6.0e-266 921.0 795 66.9
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 9.4e-235 817.4 777 63.7
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 8.0e-234 814.3 814 61.3
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 2.5e-227 792.7 780 61.8
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 2.0e-205 719.9 744 58.7
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 1.0e-188 664.5 814 52.7
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 3.2e-134 483.4 620 51.1
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 7.7e-120 435.6 560 53.0
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 3.0e-108 397.1 811 39.0
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 2.8e-106 390.6 816 38.1
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 6.3e-106 389.4 820 38.0
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 1.1e-105 388.7 799 38.2
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 1.8e-105 387.9 801 39.2
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.7e-103 381.3 785 38.5
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.5e-102 378.3 805 36.6
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.6e-101 374.8 805 38.3
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.4e-100 371.7 805 37.1
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.2e-99 368.6 850 36.6
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 3.7e-98 363.6 656 41.2
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 1.4e-97 361.7 763 39.8
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 2.4e-97 360.9 804 36.9
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 2.7e-96 357.5 849 36.7
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 2.3e-95 354.4 794 37.7
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 7.3e-94 349.4 801 37.3
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 5.7e-91 339.7 756 38.1
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.3e-90 338.6 789 37.3
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 8.3e-90 335.9 751 37.7
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 9.2e-89 332.4 792 35.1
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.3e-87 328.6 836 35.9
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 5.6e-86 323.2 881 33.4
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.6e-85 320.5 881 33.4
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.8e-84 318.2 754 37.0
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 6.8e-84 316.2 880 33.6
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 2.6e-83 314.3 820 34.5
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 9.8e-83 312.4 783 36.4
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.6e-80 305.1 861 33.3
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.6e-80 305.1 784 35.8
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.7e-80 304.3 856 33.6
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 6.6e-79 299.7 782 35.7
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 1.9e-78 298.1 208 77.9
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 3.1e-76 290.8 857 33.3
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 3.4e-75 287.3 894 31.5
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 3.4e-75 287.3 793 33.9
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 4.9e-74 283.5 785 35.7
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 2.7e-72 277.7 793 34.2
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 7.8e-72 276.2 864 32.6
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.3e-71 275.4 862 32.3
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 4.3e-70 270.4 803 32.6
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 5.6e-70 270.0 804 32.5
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 1.1e-68 265.8 807 32.8
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 1.4e-68 265.4 795 32.1
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 4.9e-66 256.9 800 31.0
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.1e-65 255.8 929 30.6
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 7.1e-65 253.1 802 31.5
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 7.1e-65 253.1 902 31.0
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 2.3e-63 248.1 795 31.7
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.3e-63 248.1 955 29.8
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.5e-62 245.4 795 33.5
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 7.3e-62 243.0 805 32.5
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 6.2e-61 240.0 821 30.9
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.2e-59 235.7 826 31.8
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 8.4e-58 229.6 781 30.6
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 4.6e-56 223.8 800 30.2
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 3.9e-55 220.7 772 31.1
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 6.6e-55 219.9 882 29.9
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.1e-54 219.2 814 29.1
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 1.4e-52 212.2 751 32.6
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 1.8e-52 211.8 748 30.7
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 2.6e-51 208.0 775 30.2
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 4.5e-51 207.2 805 28.9
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 7.6e-51 206.5 805 28.9
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 2.9e-50 204.5 784 30.1
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 4.9e-50 203.8 630 32.5
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 8.4e-50 203.0 888 28.4
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 1.1e-49 202.6 812 28.8
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 9.3e-49 199.5 804 28.2
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 3.5e-48 197.6 803 29.0
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 4.6e-48 197.2 220 48.6
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 7.9e-48 196.4 554 33.8
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 1.0e-47 196.1 820 29.0
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 1.3e-47 195.7 550 35.3
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 3.0e-47 194.5 552 37.3
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.4e-44 185.7 831 30.6
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 3.1e-44 184.5 790 29.4
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 1.5e-43 182.2 703 31.2
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 4.5e-43 180.6 788 28.0
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 4.2e-41 174.1 797 27.5
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.7e-40 171.4 790 29.0
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.3e-38 164.5 791 28.8
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 9.0e-36 156.4 137 54.7
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 1.5e-35 155.6 768 28.4
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.5e-35 155.6 137 54.0
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.1e-33 149.4 629 31.3
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 1.2e-32 146.0 879 26.7
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 1.5e-30 139.0 709 26.1
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.5e-30 138.3 786 27.9
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 9.7e-30 136.3 885 25.1
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.3e-29 136.0 588 30.6
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.6e-29 135.6 167 42.5
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 2.1e-29 135.2 698 27.8
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 3.1e-28 131.3 107 61.7
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 5.3e-28 130.6 787 25.2
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 4.5e-27 127.5 605 28.3
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.3e-26 125.9 94 66.0
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 2.2e-26 125.2 295 37.3
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 2.9e-26 124.8 733 25.8
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 1.9e-25 122.1 441 30.8
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.8e-23 115.5 515 30.5
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.5e-22 112.5 163 39.3
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 1.1e-17 96.3 240 30.4
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 1.8e-12 79.0 80 48.8
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 4.5e-11 74.3 362 25.4
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 4.5e-11 74.3 362 24.6
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 9.4e-09 66.6 76 46.1
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 1.2e-08 66.2 297 31.3
Pp3c2_29340 Physcomitrium patens HOM05D022252 ORTHO05D006412 2.1e-08 65.5 173 23.7
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 6.7e-07 60.5 74 37.8
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.7e-06 57.4 151 32.5


User provided reference genes

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