Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 0.0e+00 1401.7 730 100.0
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 5.6e-189 665.2 728 53.3
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 2.6e-178 629.8 727 52.3
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 5.9e-178 628.6 730 50.5
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 6.5e-177 625.2 728 50.1
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.0e-174 617.8 728 49.5
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.3e-172 610.9 728 49.3
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.2e-169 600.1 728 48.2
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.0e-166 591.3 728 47.8
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 2.4e-163 580.1 729 48.0
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 2.4e-155 553.5 728 44.5
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 4.1e-155 552.7 728 44.6
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 2.2e-153 547.0 728 44.2
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.2e-151 541.2 726 43.4
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 2.7e-151 540.0 728 43.8
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.4e-150 537.7 726 43.9
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 5.2e-150 535.8 726 43.9
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 1.2e-149 534.6 729 43.5
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.5e-149 534.3 726 43.5
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.0e-149 533.9 728 43.3
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.0e-149 533.9 726 43.5
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 4.4e-149 532.7 726 42.7
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 2.2e-148 530.4 726 43.0
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 2.2e-148 530.4 726 43.4
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 3.1e-147 526.6 728 42.4
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 7.0e-147 525.4 728 43.0
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 7.0e-147 525.4 728 43.5
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.2e-146 524.6 728 43.0
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.6e-146 524.2 728 42.7
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.6e-146 524.2 728 42.6
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.6e-146 524.2 728 42.7
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 2.7e-146 523.5 727 41.5
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 2.7e-146 523.5 726 41.9
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 7.7e-146 521.9 726 41.9
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.0e-145 521.5 728 43.0
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.7e-145 520.8 728 43.4
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 6.5e-145 518.8 728 42.2
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.5e-144 517.7 726 41.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.5e-144 516.9 728 42.7
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.5e-144 516.9 728 43.1
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 4.2e-144 516.2 728 42.6
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 1.6e-143 514.2 728 41.5
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.7e-143 513.5 728 42.3
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 2.7e-143 513.5 729 41.7
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 6.1e-143 512.3 725 43.9
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 2.3e-142 510.4 730 41.8
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 2.3e-142 510.4 728 41.8
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 3.0e-142 510.0 728 42.3
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 7.5e-141 505.4 300 87.3
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 9.8e-141 505.0 753 41.3
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 6.3e-140 502.3 727 42.1
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 5.4e-139 499.2 730 41.2
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 2.0e-138 497.3 725 41.2
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 2.7e-138 496.9 727 40.9
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.0e-137 495.0 727 41.1
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.3e-137 493.8 725 40.6
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 2.3e-137 493.8 726 40.5
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 5.0e-137 492.7 726 40.8
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 5.0e-137 492.7 674 45.3
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.9e-136 490.7 731 40.5
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.5e-136 490.3 724 40.7
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 3.3e-136 490.0 726 40.6
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 4.2e-136 489.6 720 40.4
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.2e-135 488.0 727 40.7
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 2.8e-135 486.9 726 40.8
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.0e-134 485.0 726 40.4
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 3.0e-134 483.4 726 40.6
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.0e-134 483.0 725 40.3
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 6.8e-134 482.3 726 41.2
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 6.8e-134 482.3 739 40.9
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 5.7e-133 479.2 727 40.4
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 2.8e-132 476.9 728 40.5
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 7.0e-131 472.2 729 40.1
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 1.2e-130 471.5 712 40.7
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 8.6e-129 465.3 728 39.0
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.5e-128 464.5 725 40.0
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.5e-128 464.5 725 38.9
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 7.3e-128 462.2 728 39.8
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.2e-127 461.5 725 39.2
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.4e-126 458.0 728 39.0
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.2e-125 454.9 770 37.8
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 2.6e-125 453.8 712 39.5
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 3.4e-125 453.4 768 38.0
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 7.5e-125 452.2 727 38.4
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 6.4e-124 449.1 816 35.7
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 8.3e-124 448.7 308 71.8
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 5.4e-123 446.0 727 39.1
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.6e-122 444.5 727 38.7
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.5e-122 443.4 769 37.7
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 6.6e-121 439.1 742 37.9
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.5e-120 438.0 300 71.7
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.2e-119 434.9 717 38.6
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.0e-119 432.2 655 40.0
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.5e-117 427.9 725 37.8
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.0e-113 413.7 300 68.7
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.1e-110 405.2 297 68.0
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 5.2e-110 402.9 715 37.9
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.2e-108 397.5 300 64.7
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.4e-107 394.8 300 64.3
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.4e-107 394.8 300 64.3
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 4.1e-107 393.3 313 65.5
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 8.1e-103 379.0 301 63.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.1e-99 368.6 300 63.0
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 3.5e-98 363.6 925 30.6
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 9.0e-94 349.0 729 32.8
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 3.3e-88 330.5 565 45.3
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.4e-86 325.1 729 30.5
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.1e-86 323.9 252 64.7
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 9.9e-85 318.9 733 30.0
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 8.4e-84 315.8 202 76.2
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.8e-81 308.1 221 69.7
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 4.8e-79 300.1 635 32.9
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.5e-72 278.5 304 49.0
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 7.9e-66 256.1 157 77.7
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 6.9e-62 243.0 646 28.2
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.7e-56 223.4 129 78.3
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 5.7e-56 223.4 155 70.3
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 7.4e-56 223.0 164 68.3
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 2.4e-54 218.0 162 66.7
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.5e-53 215.3 134 78.4
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.0e-48 198.4 297 37.7
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 3.3e-48 197.6 140 67.1
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.5e-45 187.6 155 59.4
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 3.8e-44 184.1 142 65.5
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 3.3e-40 171.0 130 65.4
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.0e-37 161.8 151 52.3
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 3.2e-35 154.5 307 33.9
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.2e-32 146.0 202 44.1
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 3.4e-32 144.4 195 44.6
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.1e-22 109.8 112 50.0
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 3.5e-21 107.8 98 51.0
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.0e-20 106.3 147 44.9
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 2.8e-18 98.2 52 76.9
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 4.0e-17 94.4 78 55.1
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.1e-14 86.3 68 57.4
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 2.4e-14 85.1 68 55.9
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 4.1e-14 84.3 68 54.4
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.9e-12 77.8 85 38.8
Medtr3g116255 Medicago truncatula HOM05D029664 ORTHO05D036753 8.6e-12 76.6 119 42.0
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 2.3e-09 68.6 41 75.6
TPR.G29431 Trifolium pratense HOM05D033146 ORTHO05D019265 5.2e-09 67.4 44 79.5
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 1.3e-07 62.8 52 61.5
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.7e-07 62.4 84 45.2
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.2e-07 62.0 41 70.7
TPR.G21107 Trifolium pratense HOM05D028375 ORTHO05D026205 1.1e-06 59.7 89 40.4
TPR.G8499 Trifolium pratense HOM05D028375 ORTHO05D008640 2.4e-06 58.5 88 34.1


User provided reference genes

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