Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 7.2e-40 166.8 83 100.0
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.5e-21 105.9 66 83.3
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 3.1e-19 98.2 63 77.8
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 5.5e-16 87.4 70 68.6
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.8e-14 82.4 72 63.9
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 4.4e-13 77.8 61 67.2
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 5.7e-13 77.4 48 81.2
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.8e-11 72.4 54 63.0
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.6e-10 69.3 62 59.7
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.6e-10 69.3 62 59.7
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 2.7e-10 68.6 46 73.9
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 2.7e-10 68.6 46 73.9
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 5.9e-10 67.4 66 54.5
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 5.9e-10 67.4 61 60.7
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.0e-09 66.6 54 66.7
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.3e-09 66.2 49 59.2
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.3e-09 66.2 66 53.0
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.7e-09 65.9 89 46.1
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.7e-09 65.9 50 66.0
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 2.2e-09 65.5 60 55.0
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 2.9e-09 65.1 52 65.4
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 2.9e-09 65.1 66 53.0
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 3.8e-09 64.7 70 54.3
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 3.8e-09 64.7 70 54.3
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 3.8e-09 64.7 55 63.6
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 6.5e-09 63.9 66 54.5
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 6.5e-09 63.9 49 65.3
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 6.5e-09 63.9 50 64.0
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 6.5e-09 63.9 42 73.8
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 8.5e-09 63.5 42 71.4
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 8.5e-09 63.5 60 55.0
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 8.5e-09 63.5 42 71.4
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.1e-08 63.2 44 65.9
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.1e-08 63.2 44 65.9
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.1e-08 63.2 44 65.9
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.1e-08 63.2 44 65.9
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.1e-08 63.2 42 69.0
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.5e-08 62.8 51 64.7
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 1.5e-08 62.8 72 48.6
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.5e-08 62.8 51 64.7
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 1.5e-08 62.8 37 78.4
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 2.5e-08 62.0 42 69.0
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.5e-08 62.0 66 54.5
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 2.5e-08 62.0 49 59.2
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 3.2e-08 61.6 54 63.0
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 3.2e-08 61.6 42 69.0
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.2e-08 61.6 66 53.0
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.2e-08 61.6 40 70.0
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 3.2e-08 61.6 66 53.0
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 3.2e-08 61.6 42 69.0
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 4.2e-08 61.2 46 63.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 4.2e-08 61.2 60 51.7
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 5.5e-08 60.8 42 69.0
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 5.5e-08 60.8 45 66.7
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 5.5e-08 60.8 58 56.9
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 5.5e-08 60.8 42 69.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 5.5e-08 60.8 67 52.2
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 7.2e-08 60.5 44 63.6
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 7.2e-08 60.5 42 66.7
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 7.2e-08 60.5 42 66.7
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 9.4e-08 60.1 60 50.0
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.6e-07 59.3 63 54.0
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.1e-07 58.9 42 66.7
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 2.7e-07 58.5 50 56.0
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 2.7e-07 58.5 42 66.7
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 2.7e-07 58.5 54 57.4
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 2.7e-07 58.5 42 66.7
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 3.6e-07 58.2 39 69.2
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 6.1e-07 57.4 40 67.5
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 6.1e-07 57.4 42 61.9
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 8.0e-07 57.0 52 63.5
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 1.0e-06 56.6 53 60.4
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.0e-06 56.6 77 50.6
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.0e-06 56.6 51 56.9
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.4e-06 56.2 51 56.9
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.4e-06 56.2 51 56.9
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.4e-06 56.2 51 56.9
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 1.8e-06 55.8 42 57.1
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 2.3e-06 55.5 40 65.0
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 3.0e-06 55.1 40 62.5
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 4.0e-06 54.7 65 50.8
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 4.0e-06 54.7 65 50.8
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 4.0e-06 54.7 55 47.3
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 5.2e-06 54.3 42 57.1
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.2e-06 54.3 51 49.0
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 6.8e-06 53.9 53 56.6
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 6.8e-06 53.9 67 43.3
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 6.8e-06 53.9 67 43.3
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 6.8e-06 53.9 42 54.8
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 8.8e-06 53.5 65 52.3
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 8.8e-06 53.5 51 56.9


User provided reference genes

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