Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30715 Trifolium pratense HOM05D003483 ORTHO05D004101 1.3e-76 289.7 145 100.0
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 5.4e-59 231.1 145 81.4
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.3e-49 199.9 140 77.9
Psat1g224320 Pisum sativum HOM05D003483 ORTHO05D004101 8.7e-49 197.2 146 72.6
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 2.9e-44 182.2 142 69.0
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 1.3e-41 173.3 141 66.7
Lj6g0024243 Lotus japonicus HOM05D003483 ORTHO05D004101 2.3e-41 172.6 136 67.6
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 3.0e-41 172.2 141 66.7
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 3.9e-41 171.8 145 66.2
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 4.8e-39 164.9 141 66.0
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 2.1e-31 139.4 150 56.7
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 1.8e-30 136.3 140 59.3
Haze_01640 Corylus avellana HOM05D003483 ORTHO05D004101 9.0e-30 134.0 151 51.7
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 3.4e-29 132.1 136 58.8
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 7.6e-29 131.0 151 51.7
Haze_01645 Corylus avellana HOM05D003483 ORTHO05D004101 9.9e-29 130.6 151 51.0
QL02p098403 Quercus lobata HOM05D003483 ORTHO05D004101 9.9e-29 130.6 120 60.8
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 2.9e-28 129.0 137 51.8
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 4.9e-28 128.3 147 51.0
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 4.9e-28 128.3 126 57.9
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 8.4e-28 127.5 95 69.5
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 4.2e-27 125.2 95 70.5
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 4.2e-27 125.2 95 69.5
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 4.2e-27 125.2 123 59.3
Cfa005532 Carpinus fangiana HOM05D003483 ORTHO05D004101 5.5e-27 124.8 147 50.3
CiPaw.06G148300 Carya illinoinensis HOM05D003483 ORTHO05D004101 5.5e-27 124.8 148 52.0
Duzib248G1166 Durio zibethinus HOM05D003483 ORTHO05D004101 7.1e-27 124.4 123 58.5
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 9.3e-27 124.0 143 52.4
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 9.3e-27 124.0 123 57.7
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 9.3e-27 124.0 117 59.8
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 1.2e-26 123.6 123 56.9
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 1.6e-26 123.2 149 47.7
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 1.6e-26 123.2 120 58.3
Eucgr.I02716 Eucalyptus grandis HOM05D003483 ORTHO05D004101 2.7e-26 122.5 108 59.3
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 3.5e-26 122.1 128 58.6
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 3.5e-26 122.1 121 53.7
COL.COLO4_17880 Corchorus olitorius HOM05D003483 ORTHO05D004101 4.6e-26 121.7 137 53.3
Gohir.A01G177800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 4.6e-26 121.7 144 51.4
Prupe.1G566700 Prunus persica HOM05D003483 ORTHO05D004101 4.6e-26 121.7 143 53.1
Gohir.A04G126900 Gossypium hirsutum HOM05D003483 ORTHO05D004101 6.0e-26 121.3 98 64.3
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 7.9e-26 120.9 140 49.3
CSS0036812 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 7.9e-26 120.9 141 48.9
CSS0038053 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 7.9e-26 120.9 141 48.9
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 1.0e-25 120.6 144 48.6
Ciclev10003624m.g Citrus clementina HOM05D003483 ORTHO05D004101 1.3e-25 120.2 137 53.3
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 1.3e-25 120.2 102 62.7
Gohir.D01G168600 Gossypium hirsutum HOM05D003483 ORTHO05D004101 1.3e-25 120.2 144 51.4
Gorai.012G160700 Gossypium raimondii HOM05D003483 ORTHO05D004101 1.8e-25 119.8 98 63.3
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 2.3e-25 119.4 142 50.0
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 2.3e-25 119.4 97 63.9
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 3.0e-25 119.0 90 68.9
Gorai.002G209300 Gossypium raimondii HOM05D003483 ORTHO05D004101 3.0e-25 119.0 144 51.4
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 3.9e-25 118.6 90 66.7
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 5.1e-25 118.2 96 63.5
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 6.7e-25 117.9 142 52.8
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 6.7e-25 117.9 114 54.4
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 8.7e-25 117.5 123 51.2
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 8.7e-25 117.5 130 53.8
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 8.7e-25 117.5 122 52.5
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 1.1e-24 117.1 99 59.6
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 1.1e-24 117.1 142 50.7
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 1.1e-24 117.1 154 48.7
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 1.5e-24 116.7 142 51.4
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 1.5e-24 116.7 148 48.6
Haze_01644 Corylus avellana HOM05D003483 ORTHO05D004101 1.9e-24 116.3 98 61.2
Haze_01648 Corylus avellana HOM05D003483 ORTHO05D004101 2.5e-24 115.9 146 50.7
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 2.5e-24 115.9 142 51.4
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 3.3e-24 115.5 90 65.6
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 3.3e-24 115.5 117 57.3
CANSAT11G2084 Cannabis sativa HOM05D003483 ORTHO05D004101 4.3e-24 115.2 138 51.4
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 4.3e-24 115.2 147 50.3
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 4.3e-24 115.2 98 61.2
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 5.6e-24 114.8 149 49.7
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 9.6e-24 114.0 114 52.6
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 9.6e-24 114.0 114 53.5
Lj6g0009955 Lotus japonicus HOM05D003483 ORTHO05D004101 9.6e-24 114.0 98 60.2
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 9.6e-24 114.0 105 59.0
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.6e-23 113.2 115 53.0
Dinv24264 Davidia involucrata HOM05D003483 ORTHO05D004101 2.1e-23 112.8 140 47.9
Nn1g08607 Nelumbo nucifera HOM05D003483 ORTHO05D004101 2.1e-23 112.8 96 62.5
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.1e-23 112.8 96 59.4
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 2.1e-23 112.8 96 59.4
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 2.1e-23 112.8 90 62.2
AUR62015051 Chenopodium quinoa HOM05D003483 ORTHO05D004101 2.8e-23 112.5 97 60.8
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 2.8e-23 112.5 136 50.7
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 3.7e-23 112.1 92 65.2
Oeu000192.1 Olea europaea HOM05D003483 ORTHO05D004101 3.7e-23 112.1 98 59.2
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 3.7e-23 112.1 119 52.1
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 4.8e-23 111.7 114 57.0
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 6.2e-23 111.3 91 62.6
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 6.2e-23 111.3 120 51.7
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 8.2e-23 110.9 85 70.6
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 1.1e-22 110.5 102 56.9
Cpa.g.sc2.3 Carica papaya HOM05D003483 ORTHO05D004101 1.4e-22 110.2 135 48.9
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 1.4e-22 110.2 93 61.3
Solyc01g104320.4 Solanum lycopersicum HOM05D003483 ORTHO05D004101 1.4e-22 110.2 95 66.3
MSTRG.5233 Avicennia marina HOM05D003483 ORTHO05D004101 1.8e-22 109.8 151 45.7
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 1.8e-22 109.8 128 52.3
Solyc11g044530.2 Solanum lycopersicum HOM05D003483 ORTHO05D004101 1.8e-22 109.8 138 47.1
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 2.4e-22 109.4 126 50.0
Actinidia00213 Actinidia chinensis HOM05D003483 ORTHO05D004101 3.1e-22 109.0 111 56.8
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 4.0e-22 108.6 98 57.1
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 4.0e-22 108.6 123 56.1
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 5.3e-22 108.2 93 59.1
Sopen11g020090 Solanum pennellii HOM05D003483 ORTHO05D004101 5.3e-22 108.2 92 60.9
Ah.01g002720 Amaranthus hybridus HOM05D003483 ORTHO05D004101 6.9e-22 107.8 124 51.6
EL10Ac9g22715 Beta vulgaris HOM05D003483 ORTHO05D004101 6.9e-22 107.8 99 57.6
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 6.9e-22 107.8 124 51.6
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 1.2e-21 107.1 122 51.6
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.2e-21 107.1 123 52.8
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.2e-21 107.1 123 52.8
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 1.2e-21 107.1 146 47.3
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 1.2e-21 107.1 104 53.8
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 1.2e-21 107.1 92 58.7
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 1.5e-21 106.7 140 47.1
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 2.0e-21 106.3 94 55.3
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 2.6e-21 105.9 70 75.7
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 2.6e-21 105.9 92 58.7
QL02p098396 Quercus lobata HOM05D003483 ORTHO05D004101 2.6e-21 105.9 97 57.7
Sabra03G0012000 Salix brachista HOM05D003483 ORTHO05D004101 3.4e-21 105.5 139 45.3
Sopen01g046770 Solanum pennellii HOM05D003483 ORTHO05D004101 3.4e-21 105.5 145 47.6
FAN04G0580 Fragaria x ananassa HOM05D003483 ORTHO05D004101 4.5e-21 105.1 132 50.8
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 4.5e-21 105.1 147 43.5
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 4.5e-21 105.1 85 62.4
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 7.6e-21 104.4 129 45.7
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 1.0e-20 104.0 107 55.1
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 1.3e-20 103.6 93 58.1
Hund01591 Selenicereus undatus HOM05D003483 ORTHO05D004101 2.2e-20 102.8 146 46.6
DCAR_021518 Daucus carota HOM05D003483 ORTHO05D004101 2.9e-20 102.4 108 51.9
Lalb_Chr15g0090651 Lupinus albus HOM05D003483 ORTHO05D004101 2.9e-20 102.4 92 56.5
TPR.G31211 Trifolium pratense HOM05D003483 ORTHO05D004101 3.8e-20 102.1 51 96.1
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 6.5e-20 101.3 90 57.8
vmacro01767 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 6.5e-20 101.3 73 68.5
Oeu000193.1 Olea europaea HOM05D003483 ORTHO05D004101 1.4e-19 100.1 92 58.7
AUR62015054 Chenopodium quinoa HOM05D003483 ORTHO05D004101 1.9e-19 99.8 120 49.2
Gohir.D04G171800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 2.5e-19 99.4 104 52.9
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 2.5e-19 99.4 82 58.5
CARHR147060 Cardamine hirsuta HOM05D003483 ORTHO05D004101 3.2e-19 99.0 84 58.3
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 4.2e-19 98.6 96 57.3
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 5.5e-19 98.2 152 41.4
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 5.5e-19 98.2 98 53.1
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 7.1e-19 97.8 71 64.8
C07p35050 Brassica napus HOM05D003483 ORTHO05D004101 1.3e-17 93.6 90 53.3
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 2.3e-17 92.8 84 56.0
AT3G26070 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 2.3e-17 92.8 84 56.0
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 2.3e-17 92.8 84 56.0
BcaC06g33930 Brassica carinata HOM05D003483 ORTHO05D004101 3.0e-17 92.4 117 45.3
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 3.9e-17 92.0 84 56.0
BraA06t27143Z Brassica rapa HOM05D003483 ORTHO05D004101 3.9e-17 92.0 84 56.0
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 5.1e-17 91.7 84 54.8
Aa31LG2G6290 Aethionema arabicum HOM05D003483 ORTHO05D004101 6.7e-17 91.3 84 54.8
Actinidia17473 Actinidia chinensis HOM05D004517 ORTHO05D005366 8.7e-17 90.9 68 70.6
BcaC06g31094 Brassica carinata HOM05D003483 ORTHO05D004101 8.7e-17 90.9 84 54.8
Carub.0005s0393 Capsella rubella HOM05D003483 ORTHO05D004101 8.7e-17 90.9 84 53.6
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 1.9e-16 89.7 84 54.8
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 4.3e-16 88.6 72 62.5
AL5G14760 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 5.7e-16 88.2 79 54.4
Carub.0005s0394 Capsella rubella HOM05D003483 ORTHO05D004101 9.7e-16 87.4 130 43.8
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 2.2e-15 86.3 72 58.3
vmacro19900 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 2.2e-15 86.3 137 41.6
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 3.7e-15 85.5 71 60.6
AT3G26080 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 1.1e-14 84.0 120 40.8
Mapoly0103s0070 Marchantia polymorpha HOM05D003483 ORTHO05D004101 1.4e-14 83.6 72 54.2
TPR.G22934 Trifolium pratense HOM05D003483 ORTHO05D004101 5.3e-14 81.6 39 97.4
CBR_g3139 Chara braunii HOM05D003483 ORTHO05D004101 6.9e-14 81.3 77 54.5
Peaxi162Scf00152g01330 Petunia axillaris HOM05D003483 ORTHO05D004101 2.6e-13 79.3 109 44.0
PSO170G3925 Papaver somniferum HOM05D003483 ORTHO05D004101 7.2e-11 71.2 134 34.3
Nitab4.5_0000044g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.1e-10 69.7 107 42.1
TPR.G2065 Trifolium pratense HOM05D003483 ORTHO05D004101 1.4e-09 67.0 31 100.0
PRCOL_00005437 Prasinoderma coloniale HOM05D003483 ORTHO05D004101 3.9e-09 65.5 62 53.2
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 6.7e-09 64.7 81 45.7
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 1.1e-08 63.9 65 52.3
ClCG09G014000 Citrullus lanatus HOM05D003483 ORTHO05D004101 1.1e-08 63.9 75 49.3
Duzib132G0067 Durio zibethinus HOM05D003483 ORTHO05D004101 4.3e-08 62.0 85 44.7
AUR62017511 Chenopodium quinoa HOM05D003483 ORTHO05D004101 9.7e-08 60.8 35 80.0
Nitab4.5_0001783g0130 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.2e-07 59.7 38 76.3
PRCOL_00003721 Prasinoderma coloniale HOM05D003483 ORTHO05D002254 6.3e-07 58.2 67 43.3
BcaC06g31097 Brassica carinata HOM05D000468 ORTHO05D004101 8.2e-07 57.8 38 71.1
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 1.4e-06 57.0 63 47.6
HPP92_011153 Vanilla planifolia HOM05D003483 ORTHO05D004101 2.4e-06 56.2 75 41.3
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 5.3e-06 55.1 72 36.1
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 6.9e-06 54.7 73 43.8
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 6.9e-06 54.7 135 30.4


User provided reference genes

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