Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 9.3e-248 860.1 566 100.0
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 3.2e-224 781.9 567 85.4
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 2.3e-222 775.8 498 92.0
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 1.9e-208 729.6 496 88.3
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 5.7e-205 718.0 502 83.9
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 1.3e-204 716.8 486 85.2
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 5.2e-198 694.9 488 83.0
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 5.2e-198 694.9 506 84.2
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 3.7e-196 688.7 484 85.3
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 2.7e-194 682.6 506 81.2
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 4.0e-190 668.7 505 82.0
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 4.0e-190 668.7 520 77.3
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 1.8e-187 659.8 486 79.0
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 4.5e-186 655.2 513 79.1
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 1.1e-184 650.6 488 80.1
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 1.9e-184 649.8 502 76.7
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 1.4e-182 643.7 539 72.7
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 3.0e-182 642.5 500 77.6
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.5e-181 640.2 485 77.3
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 4.4e-181 638.6 484 76.7
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 7.5e-181 637.9 506 75.3
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.7e-180 636.7 486 77.6
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 2.2e-180 636.3 487 78.4
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 1.4e-179 633.6 503 77.9
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 4.1e-179 632.1 504 76.4
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 9.2e-179 630.9 486 78.2
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 5.9e-178 628.2 516 74.6
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 5.0e-177 625.2 516 75.4
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 7.3e-176 621.3 485 77.9
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 9.5e-176 620.9 498 75.5
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 2.1e-175 619.8 487 76.8
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 6.1e-175 618.2 503 75.7
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.3e-172 610.5 502 75.3
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 7.0e-171 604.7 512 70.9
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.6e-170 603.6 485 74.6
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 5.9e-170 601.7 501 73.7
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 1.7e-169 600.1 484 73.1
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 2.5e-168 596.3 490 75.7
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 1.4e-166 590.5 448 77.7
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 2.3e-166 589.7 517 71.0
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 3.1e-166 589.3 454 76.2
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 6.8e-166 588.2 503 71.2
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 1.2e-165 587.4 485 74.6
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 4.4e-165 585.5 501 74.1
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 3.7e-164 582.4 510 71.8
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 8.3e-164 581.3 455 77.1
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 1.4e-163 580.5 485 73.0
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 4.1e-163 578.9 449 74.2
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 7.0e-163 578.2 450 76.7
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 9.2e-163 577.8 450 76.2
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 2.0e-162 576.6 449 73.3
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 2.7e-162 576.2 449 73.3
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 6.0e-162 575.1 501 71.9
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 1.0e-161 574.3 502 69.1
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 1.7e-161 573.5 486 70.6
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 1.7e-161 573.5 486 70.6
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 3.0e-161 572.8 485 72.6
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 2.5e-160 569.7 487 72.7
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 3.6e-159 565.8 486 69.1
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 4.7e-159 565.5 519 69.0
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 4.7e-159 565.5 486 71.0
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 1.4e-158 563.9 488 71.3
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 3.1e-158 562.8 502 71.3
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 5.2e-158 562.0 505 69.9
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 6.8e-158 561.6 485 72.8
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 2.2e-156 556.6 486 70.8
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 4.9e-156 555.4 500 69.6
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 6.4e-156 555.1 497 67.4
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 2.1e-154 550.1 488 70.7
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 2.5e-152 543.1 502 70.3
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 7.3e-152 541.6 509 64.6
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.6e-151 540.4 484 71.7
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 1.6e-151 540.4 374 79.9
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 6.2e-151 538.5 480 70.8
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 4.4e-149 532.3 460 69.6
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 7.1e-147 525.0 450 72.7
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 1.2e-146 524.2 450 71.8
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.0e-145 519.6 374 77.3
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 5.6e-144 515.4 467 66.8
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 2.1e-143 513.5 481 65.1
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 4.0e-142 509.2 449 67.9
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 1.3e-140 504.2 375 76.8
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 2.9e-140 503.1 502 64.3
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 8.4e-140 501.5 528 61.9
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 8.4e-140 501.5 388 75.8
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 4.6e-138 495.7 375 75.5
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 4.0e-134 482.6 496 59.5
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.0e-129 466.5 391 72.6
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 7.1e-123 445.3 528 58.7
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 6.7e-113 412.1 476 56.3
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 7.6e-109 398.7 503 51.3
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 4.2e-107 392.9 467 55.5
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 2.1e-106 390.6 345 72.8
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 7.9e-106 388.7 386 67.4
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 3.0e-105 386.7 379 66.8
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.9e-104 384.0 369 70.5
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 2.8e-103 380.2 362 68.2
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 4.8e-103 379.4 338 69.8
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 2.0e-101 374.0 451 59.2
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 5.5e-99 365.9 291 74.6
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 2.3e-97 360.5 310 72.9
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 2.2e-95 354.0 393 66.2
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 1.2e-93 348.2 314 74.2
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 1.2e-85 321.6 521 48.6
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 8.8e-81 305.4 341 59.5
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 1.1e-78 298.5 521 45.3
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 5.5e-75 286.2 242 69.8
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 4.0e-73 280.0 254 72.8
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 9.8e-72 275.4 254 72.0
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 9.8e-64 248.8 273 59.0
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.0e-61 241.1 323 58.8
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 2.0e-61 241.1 338 56.2
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 1.6e-58 231.5 154 77.3
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 2.1e-58 231.1 246 55.7
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 1.3e-55 221.9 128 88.3
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 3.7e-55 220.3 458 46.1
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.4e-54 218.4 128 87.5
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 1.3e-52 211.8 126 86.5
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.7e-50 203.4 349 45.0
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.2e-37 162.2 84 95.2
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 7.8e-37 159.5 159 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 5.1e-36 156.8 473 33.0
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 1.2e-34 152.1 142 62.0
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 3.5e-29 134.0 130 76.2
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 4.7e-26 123.6 134 68.7
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 7.6e-24 116.3 115 66.1
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 6.4e-23 113.2 66 86.4
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.2e-21 109.0 72 77.8
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.9e-20 104.0 66 81.8
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 3.9e-20 104.0 87 66.7
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 6.6e-20 103.2 98 73.5
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 5.6e-19 100.1 86 62.8
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.4e-17 94.7 378 29.1
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 9.0e-17 92.8 64 79.7
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 2.3e-12 78.2 50 76.0
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 5.3e-09 67.0 76 56.6
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 4.9e-07 60.5 294 31.6
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 3.2e-06 57.8 155 29.7


User provided reference genes

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