Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30660 Trifolium pratense HOM05D001323 ORTHO05D003004 1.1e-102 376.7 195 100.0
TPR.G30653 Trifolium pratense HOM05D002915 ORTHO05D003004 1.0e-20 104.4 52 100.0
TPR.G13381 Trifolium pratense HOM05D002915 ORTHO05D003004 3.3e-19 99.4 52 94.2
Psat3g087600 Pisum sativum HOM05D001323 ORTHO05D044370 1.4e-14 84.0 68 64.7
Psat3g205920 Pisum sativum HOM05D001323 ORTHO05D001223 1.4e-14 84.0 68 64.7
Medtr7g086110 Medicago truncatula HOM05D001323 ORTHO05D001223 1.2e-13 80.9 68 61.8
Ca_08289_v3 Cicer arietinum L. HOM05D001323 ORTHO05D044370 2.1e-13 80.1 67 64.2
Psat5g219920 Pisum sativum HOM05D001323 ORTHO05D001223 1.8e-12 77.0 68 61.8
Lj1g0006463 Lotus japonicus HOM05D001323 ORTHO05D001223 8.7e-12 74.7 68 58.8
VMungo1383G1033 Vigna mungo HOM05D001323 ORTHO05D001223 1.1e-11 74.3 67 58.2
Phvul.001G113400 Phaseolus vulgaris HOM05D001323 ORTHO05D001223 1.9e-11 73.6 67 56.7
Glyma.19G114100 Glycine max HOM05D001323 ORTHO05D001223 4.3e-11 72.4 67 58.2
TPR.G30650 Trifolium pratense HOM05D001323 ORTHO05D411649 1.6e-10 70.5 50 66.0
vmacro20464 Vaccinium macrocarpon HOM05D001323 ORTHO05D001223 2.4e-09 66.6 74 52.7
CSS0004928 Camellia sinensis var. sinensis HOM05D001323 ORTHO05D001223 4.0e-09 65.9 69 53.6
Lj2C511T3 Lonicera japonica HOM05D001323 ORTHO05D001223 4.0e-09 65.9 74 50.0
Pp3c1_36000 Physcomitrium patens HOM05D001323 ORTHO05D001223 5.3e-09 65.5 73 46.6
Rhsim10G0185500 Rhododendron simsii HOM05D001323 ORTHO05D001223 5.3e-09 65.5 74 54.1
HPP92_013199 Vanilla planifolia HOM05D001323 ORTHO05D001223 5.3e-09 65.5 70 47.1
arahy.Tifrunner.gnm1.ann1.T3X479 Arachis hypogaea HOM05D001323 ORTHO05D001223 6.9e-09 65.1 74 45.9
Nitab4.5_0000914g0180 Nicotiana tabacum HOM05D001323 ORTHO05D001223 6.9e-09 65.1 76 50.0
Sopen05g033270 Solanum pennellii HOM05D001323 ORTHO05D001223 6.9e-09 65.1 71 46.5
Actinidia04132 Actinidia chinensis HOM05D001323 ORTHO05D001223 9.0e-09 64.7 74 50.0
CAN.G269.8 Capsicum annuum HOM05D001323 ORTHO05D001223 9.0e-09 64.7 74 47.3
Solyc05g054800.3 Solanum lycopersicum HOM05D001323 ORTHO05D001223 9.0e-09 64.7 71 46.5
Zm00001eb233290 Zea mays HOM05D001323 ORTHO05D001223 9.0e-09 64.7 72 45.8
arahy.Tifrunner.gnm1.ann1.0CZ09I Arachis hypogaea HOM05D001323 ORTHO05D001223 1.5e-08 63.9 74 45.9
Sabra16G0251500 Salix brachista HOM05D001914 ORTHO05D001983 1.5e-08 63.9 72 51.4
Hma1.2p1_0158F.1_g069610 Hydrangea macrophylla HOM05D001323 ORTHO05D001223 2.0e-08 63.5 69 49.3
Peaxi162Scf00015g00243 Petunia axillaris HOM05D001323 ORTHO05D001223 2.0e-08 63.5 76 48.7
SalBow8G0490 Salvia bowleyana HOM05D001323 ORTHO05D001223 2.0e-08 63.5 69 50.7
vmacro05026 Vaccinium macrocarpon HOM05D001323 ORTHO05D001223 2.0e-08 63.5 93 45.2
Eucgr.G00564 Eucalyptus grandis HOM05D001323 ORTHO05D001223 3.4e-08 62.8 69 49.3
Potri.001G381500 Populus trichocarpa HOM05D001323 ORTHO05D001223 3.4e-08 62.8 72 51.4
PGSC0003DMG400023414 Solanum tuberosum HOM05D001323 ORTHO05D001223 3.4e-08 62.8 71 43.7
Migut.H01351 Erythranthe guttata HOM05D001323 ORTHO05D001223 4.5e-08 62.4 70 50.0
Solyc02g036440.3 Solanum lycopersicum HOM05D001323 ORTHO05D001223 4.5e-08 62.4 74 45.9
Sopen02g011790 Solanum pennellii HOM05D001323 ORTHO05D001223 4.5e-08 62.4 74 45.9
PGSC0003DMG400021458 Solanum tuberosum HOM05D001323 ORTHO05D001223 5.8e-08 62.0 74 44.6
Rhsim01G0006900 Rhododendron simsii HOM05D001323 ORTHO05D001223 7.6e-08 61.6 69 53.6
Lj3g0020989 Lotus japonicus HOM05D001323 ORTHO05D001223 1.0e-07 61.2 61 49.2
Pp3c2_9840 Physcomitrium patens HOM05D001323 ORTHO05D001223 1.0e-07 61.2 73 43.8
Ciclev10012117m.g Citrus clementina HOM05D001323 ORTHO05D001223 1.3e-07 60.8 69 49.3
Manes.02G081400 Manihot esculenta HOM05D001323 ORTHO05D001223 1.3e-07 60.8 69 47.8
arahy.Tifrunner.gnm1.ann1.GB6ZUZ Arachis hypogaea HOM05D001323 ORTHO05D001223 1.7e-07 60.5 72 41.7
arahy.Tifrunner.gnm1.ann1.W20RPM Arachis hypogaea HOM05D001323 ORTHO05D001223 1.7e-07 60.5 72 41.7
MELO3C019568.2 Cucumis melo HOM05D001323 ORTHO05D001223 1.7e-07 60.5 67 52.2
Eucgr.G00565 Eucalyptus grandis HOM05D001323 ORTHO05D001223 1.7e-07 60.5 69 47.8
SalBow4G0001 Salvia bowleyana HOM05D001323 ORTHO05D001223 1.7e-07 60.5 73 45.2
unitig_46.g18491 Utricularia gibba HOM05D001323 ORTHO05D001223 1.7e-07 60.5 70 47.1
CsaV3_3G018000 Cucumis sativus L. HOM05D001323 ORTHO05D001223 2.2e-07 60.1 69 50.7
Peaxi162Scf00294g00616 Petunia axillaris HOM05D001323 ORTHO05D001223 2.9e-07 59.7 74 44.6
Ca_01141_v3 Cicer arietinum L. HOM05D001323 ORTHO05D001223 3.8e-07 59.3 61 49.2
Os02g0173800 Oryza sativa ssp. japonica HOM05D001323 ORTHO05D001223 3.8e-07 59.3 72 44.4
SMO361G0611 Selaginella moellendorffii HOM05D001323 ORTHO05D001223 3.8e-07 59.3 69 46.4
TPR.G37139 Trifolium pratense HOM05D001323 ORTHO05D001223 3.8e-07 59.3 61 50.8
Ca_23085_v3 Cicer arietinum L. HOM05D001323 ORTHO05D001223 4.9e-07 58.9 72 48.6
Migut.F00470 Erythranthe guttata HOM05D001323 ORTHO05D001223 4.9e-07 58.9 73 45.2
SGA_v2.0_scaffold543G52823 Striga asiatica HOM05D001323 ORTHO05D001223 4.9e-07 58.9 73 43.8
TPR.G28433 Trifolium pratense HOM05D001323 ORTHO05D001223 4.9e-07 58.9 72 44.4
Zm00001eb207060 Zea mays HOM05D001323 ORTHO05D001223 4.9e-07 58.9 72 43.1
ClCG05G010500 Citrullus lanatus HOM05D001323 ORTHO05D001223 6.5e-07 58.5 69 49.3
Nitab4.5_0000029g0170 Nicotiana tabacum HOM05D001323 ORTHO05D001223 6.5e-07 58.5 75 45.3
Oeu044191.1 Olea europaea HOM05D001323 ORTHO05D001223 6.5e-07 58.5 75 46.7
Prupe.3G014200 Prunus persica HOM05D001323 ORTHO05D001223 6.5e-07 58.5 69 50.7
CiPaw.03G075900 Carya illinoinensis HOM05D001323 ORTHO05D001223 8.4e-07 58.2 75 49.3
Duzib192G0570 Durio zibethinus HOM05D001323 ORTHO05D001223 8.4e-07 58.2 69 47.8
FAN26G2485 Fragaria x ananassa HOM05D001323 ORTHO05D001223 8.4e-07 58.2 65 47.7
FAN28G2895 Fragaria x ananassa HOM05D001323 ORTHO05D001223 8.4e-07 58.2 65 47.7
FAN28G3020 Fragaria x ananassa HOM05D001323 ORTHO05D001223 8.4e-07 58.2 65 47.7
Os06g0665000 Oryza sativa ssp. japonica HOM05D001323 ORTHO05D001223 8.4e-07 58.2 72 38.9
TAR374G0566 Trochodendron aralioides HOM05D001323 ORTHO05D001223 8.4e-07 58.2 70 48.6
TAR374G1194 Trochodendron aralioides HOM05D001323 ORTHO05D001223 8.4e-07 58.2 70 48.6
Zm00001eb274400 Zea mays HOM05D001323 ORTHO05D001223 8.4e-07 58.2 72 38.9
Ah.04g162940 Amaranthus hybridus HOM05D000356 ORTHO05D000265 1.1e-06 57.8 69 43.5
Cfa007747 Carpinus fangiana HOM05D001323 ORTHO05D001223 1.1e-06 57.8 69 49.3
Dinv28247 Davidia involucrata HOM05D001323 ORTHO05D001223 1.1e-06 57.8 74 48.6
FvH4_1g27280 Fragaria vesca HOM05D001323 ORTHO05D001223 1.1e-06 57.8 65 47.7
FAN19G1399 Fragaria x ananassa HOM05D001323 ORTHO05D001223 1.1e-06 57.8 65 47.7
Gohir.D06G189600 Gossypium hirsutum HOM05D001323 ORTHO05D001223 1.1e-06 57.8 69 46.4
MBI18_g01505_MAGBIO Magnolia biondii HOM05D001323 ORTHO05D001223 1.1e-06 57.8 71 45.1
Manes.10G057000 Manihot esculenta HOM05D001323 ORTHO05D001223 1.1e-06 57.8 69 44.9
PSO675G1091 Papaver somniferum HOM05D001323 ORTHO05D001223 1.1e-06 57.8 69 46.4
Psat5g297240 Pisum sativum HOM05D001323 ORTHO05D001223 1.1e-06 57.8 61 47.5
RcHm_v2.0_Chr3g0488711 Rosa chinensis HOM05D001323 ORTHO05D001223 1.1e-06 57.8 65 46.2
AagrBONN_evm.TU.Sc2ySwM_117.712 Anthoceros agrestis HOM05D001323 ORTHO05D001223 1.4e-06 57.4 62 46.8
CDE05G1757 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 1.4e-06 57.4 72 45.8
Oeu042525.1 Olea europaea HOM05D001323 ORTHO05D001223 1.4e-06 57.4 72 43.1
PSO675G7858 Papaver somniferum HOM05D001323 ORTHO05D001223 1.4e-06 57.4 72 44.4
PGR042G1465 Punica granatum HOM05D001323 ORTHO05D001223 1.4e-06 57.4 69 47.8
ATR0697G115 Amborella trichopoda HOM05D001323 ORTHO05D001223 1.9e-06 57.0 74 44.6
Haze_14326 Corylus avellana HOM05D001323 ORTHO05D001223 1.9e-06 57.0 69 47.8
Gohir.A06G182800 Gossypium hirsutum HOM05D001323 ORTHO05D001223 1.9e-06 57.0 69 44.9
Os09g0560600 Oryza sativa ssp. japonica HOM05D001323 ORTHO05D001223 1.9e-06 57.0 70 42.9
Phvul.005G170000 Phaseolus vulgaris HOM05D001323 ORTHO05D001223 1.9e-06 57.0 74 40.5
VMungo1309G2263 Vigna mungo HOM05D001323 ORTHO05D001223 1.9e-06 57.0 75 49.3
Zm00001eb389780 Zea mays HOM05D001323 ORTHO05D001223 1.9e-06 57.0 71 39.4
Atru.chr7.1995 Acer truncatum HOM05D001323 ORTHO05D001223 2.5e-06 56.6 70 41.4
AagrBONN_evm.TU.Sc2ySwM_117.329 Anthoceros agrestis HOM05D001323 ORTHO05D001223 2.5e-06 56.6 72 40.3
CSS0004327 Camellia sinensis var. sinensis HOM05D001323 ORTHO05D001223 2.5e-06 56.6 69 46.4
CSS0036073 Camellia sinensis var. sinensis HOM05D001323 ORTHO05D001223 2.5e-06 56.6 69 46.4
Dinv06070 Davidia involucrata HOM05D001323 ORTHO05D001223 2.5e-06 56.6 74 44.6
Nitab4.5_0002071g0020 Nicotiana tabacum HOM05D001323 ORTHO05D001223 2.5e-06 56.6 70 45.7
TWI74G0591 Tripterygium wilfordii HOM05D001323 ORTHO05D001223 2.5e-06 56.6 70 45.7
vmacro22936 Vaccinium macrocarpon HOM05D001323 ORTHO05D001223 2.5e-06 56.6 71 46.5
ATR1098G145 Amborella trichopoda HOM05D001323 ORTHO05D001223 3.2e-06 56.2 67 46.3
HanXRQChr05g0151661 Helianthus annuus HOM05D001323 ORTHO05D001223 3.2e-06 56.2 80 40.0
HanXRQChr07g0199001 Helianthus annuus HOM05D001323 ORTHO05D001223 3.2e-06 56.2 80 40.0
HanXRQChr13g0404361 Helianthus annuus HOM05D001323 ORTHO05D001223 3.2e-06 56.2 80 40.0
Nn4g24747 Nelumbo nucifera HOM05D001323 ORTHO05D001223 3.2e-06 56.2 70 45.7
PSO675G3921 Papaver somniferum HOM05D001323 ORTHO05D001223 3.2e-06 56.2 69 44.9
Atru.chr12.1703 Acer truncatum HOM05D001323 ORTHO05D001223 4.2e-06 55.8 70 42.9
CAN.G1602.2 Capsicum annuum HOM05D001323 ORTHO05D001223 4.2e-06 55.8 71 43.7
Cpa.g.sc178.34 Carica papaya HOM05D001323 ORTHO05D001223 4.2e-06 55.8 69 43.5
Gohir.A06G196400 Gossypium hirsutum HOM05D001323 ORTHO05D001223 4.2e-06 55.8 69 43.5
MD17G1286800 Malus domestica HOM05D001323 ORTHO05D001223 4.2e-06 55.8 69 43.5
Medtr2g101400 Medicago truncatula HOM05D001323 ORTHO05D001223 4.2e-06 55.8 74 44.6
Nitab4.5_0002862g0060 Nicotiana tabacum HOM05D001323 ORTHO05D001223 4.2e-06 55.8 72 45.8
PSO541G3353 Papaver somniferum HOM05D001323 ORTHO05D001223 4.2e-06 55.8 70 42.9
Psat1g015320 Pisum sativum HOM05D001323 ORTHO05D001223 4.2e-06 55.8 72 43.1
Thecc.06G044000 Theobroma cacao HOM05D001323 ORTHO05D001223 4.2e-06 55.8 69 47.8
Thecc.07G189300 Theobroma cacao HOM05D001323 ORTHO05D001223 4.2e-06 55.8 68 44.1
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 4.2e-06 55.8 74 41.9
Dinv06072 Davidia involucrata HOM05D001323 ORTHO05D001223 5.5e-06 55.5 69 43.5
FAN23G1297 Fragaria x ananassa HOM05D001323 ORTHO05D001223 5.5e-06 55.5 65 46.2
Lalb_Chr19g0133171 Lupinus albus HOM05D001323 ORTHO05D001223 5.5e-06 55.5 72 45.8
PSO675G4102 Papaver somniferum HOM05D001323 ORTHO05D001223 5.5e-06 55.5 70 42.9
Sed0015412 Sechium edule HOM05D001323 ORTHO05D001223 5.5e-06 55.5 69 47.8
TWI59G0776 Tripterygium wilfordii HOM05D001323 ORTHO05D001223 5.5e-06 55.5 69 44.9
Actinidia40412 Actinidia chinensis HOM05D001323 ORTHO05D001223 7.1e-06 55.1 73 46.6
ATR0807G061 Amborella trichopoda HOM05D001323 ORTHO05D001223 7.1e-06 55.1 70 40.0
AUR62041052 Chenopodium quinoa HOM05D001323 ORTHO05D001223 7.1e-06 55.1 70 44.3
Cc03_g13970 Coffea canephora HOM05D001323 ORTHO05D001223 7.1e-06 55.1 69 43.5
Lalb_Chr03g0031891 Lupinus albus HOM05D001323 ORTHO05D001223 7.1e-06 55.1 72 43.1
Phvul.009G212500 Phaseolus vulgaris HOM05D001323 ORTHO05D001223 7.1e-06 55.1 75 46.7
Potri.017G139300 Populus trichocarpa HOM05D001323 ORTHO05D001223 7.1e-06 55.1 70 42.9
CiPaw.04G049600 Carya illinoinensis HOM05D001323 ORTHO05D001223 9.3e-06 54.7 69 47.8
Ca_03108_v3 Cicer arietinum L. HOM05D001323 ORTHO05D001223 9.3e-06 54.7 70 42.9
Gorai.010G237900 Gossypium raimondii HOM05D001323 ORTHO05D001223 9.3e-06 54.7 69 43.5
MD09G1280100 Malus domestica HOM05D001323 ORTHO05D001223 9.3e-06 54.7 69 44.9
Potri.004G081100 Populus trichocarpa HOM05D001323 ORTHO05D001223 9.3e-06 54.7 70 44.3


User provided reference genes

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