Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 1.4e-139 499.6 257 100.0
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 1.0e-137 493.4 258 98.8
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 3.3e-136 488.4 257 97.3
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 1.1e-131 473.4 257 91.1
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.1e-131 473.4 257 91.4
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 5.5e-131 471.1 258 91.1
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 7.9e-130 467.2 258 90.3
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 7.9e-130 467.2 258 93.8
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.4e-129 466.5 259 93.1
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 5.3e-126 454.5 257 86.8
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 7.0e-126 454.1 257 86.4
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 5.0e-124 448.0 257 85.2
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 5.0e-124 448.0 257 85.2
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 8.5e-124 447.2 257 85.6
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 1.1e-123 446.8 258 88.4
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 2.5e-123 445.7 256 85.5
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 3.2e-123 445.3 258 88.0
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 7.2e-123 444.1 257 85.6
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 9.4e-123 443.7 258 85.3
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 1.6e-122 443.0 256 85.2
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 2.1e-122 442.6 258 85.3
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 3.6e-122 441.8 257 85.2
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 8.0e-122 440.7 257 84.4
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 1.0e-121 440.3 257 84.0
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 2.3e-121 439.1 261 84.7
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 3.0e-121 438.7 257 84.0
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 4.0e-121 438.3 256 84.0
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 4.0e-121 438.3 257 83.3
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 4.0e-121 438.3 257 84.0
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 5.2e-121 438.0 257 84.4
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 6.7e-121 437.6 254 84.3
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.2e-120 436.8 257 83.7
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 1.2e-120 436.8 257 83.7
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.5e-120 436.4 257 84.8
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 1.5e-120 436.4 257 84.0
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 2.0e-120 436.0 257 84.4
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.6e-120 435.6 254 83.9
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.6e-120 435.6 254 83.9
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 5.7e-120 434.5 258 83.7
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 5.7e-120 434.5 258 83.7
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 7.5e-120 434.1 257 83.7
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.3e-119 433.3 258 84.1
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 1.3e-119 433.3 257 82.9
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 2.8e-119 432.2 257 82.5
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 3.7e-119 431.8 254 83.9
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 4.8e-119 431.4 257 81.3
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 6.3e-119 431.0 257 82.5
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 6.3e-119 431.0 257 82.1
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 8.2e-119 430.6 257 82.1
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 1.1e-118 430.3 257 81.3
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 1.4e-118 429.9 257 82.1
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.4e-118 429.9 278 78.4
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.8e-118 429.5 253 83.4
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 2.4e-118 429.1 257 81.7
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 3.1e-118 428.7 258 82.6
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 3.1e-118 428.7 258 82.2
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 3.1e-118 428.7 257 80.9
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 1.2e-117 426.8 257 80.9
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 1.2e-117 426.8 266 80.8
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 1.6e-117 426.4 257 81.7
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 1.6e-117 426.4 257 80.9
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 2.0e-117 426.0 253 83.0
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 2.0e-117 426.0 257 80.5
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 2.0e-117 426.0 257 81.7
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 2.7e-117 425.6 257 80.9
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 4.5e-117 424.9 253 81.0
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 4.5e-117 424.9 285 75.8
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.7e-117 424.1 257 79.0
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.0e-116 423.7 253 82.2
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 1.0e-116 423.7 256 80.9
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 1.0e-116 423.7 253 80.6
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.0e-116 423.7 253 81.8
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 2.9e-116 422.2 257 81.3
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 6.5e-116 421.0 257 82.9
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 1.1e-115 420.2 257 82.5
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.5e-115 419.9 284 75.0
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 7.2e-115 417.5 238 83.6
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 2.6e-112 409.1 225 86.2
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 3.4e-112 408.7 211 93.8
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 1.7e-111 406.4 254 76.8
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.8e-111 405.6 246 82.1
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 8.3e-111 404.1 226 85.0
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.4e-110 403.3 297 69.0
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 5.4e-110 401.4 254 77.2
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 7.7e-109 397.5 252 76.6
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 1.7e-108 396.4 255 75.7
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 6.1e-106 387.9 235 80.9
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 6.1e-106 387.9 235 80.9
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 4.4e-104 381.7 222 82.0
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 1.4e-102 376.7 254 74.8
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 5.4e-102 374.8 258 73.6
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 5.4e-102 374.8 257 75.5
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.2e-101 373.6 257 75.1
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.9e-100 369.0 253 70.4
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 7.3e-99 364.4 253 71.9
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 9.5e-99 364.0 257 73.5
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.2e-98 363.6 261 74.3
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.2e-98 363.6 266 72.6
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 3.0e-97 359.0 212 83.5
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 6.8e-97 357.8 286 68.2
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 8.9e-97 357.5 253 69.2
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 8.9e-97 357.5 456 47.4
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 1.5e-96 356.7 253 68.8
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 5.9e-93 344.7 194 85.6
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 1.1e-91 340.5 254 66.9
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.1e-91 340.5 213 77.0
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 2.1e-90 336.3 240 68.8
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 4.0e-89 332.0 199 79.9
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 1.5e-88 330.1 254 68.5
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 8.3e-87 324.3 255 65.5
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 1.9e-86 323.2 268 65.7
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 3.6e-82 308.9 245 65.7
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 3.6e-82 308.9 272 62.9
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 5.2e-81 305.1 253 61.3
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 2.0e-80 303.1 206 74.8
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 5.4e-78 295.0 257 63.4
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 4.3e-75 285.4 339 51.6
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.3e-75 284.6 270 58.5
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 1.4e-73 280.4 161 82.6
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.4e-73 280.4 213 69.0
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 2.0e-72 276.6 161 83.9
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 8.4e-71 271.2 286 53.8
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.4e-70 270.4 225 55.1
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.3e-68 263.1 211 64.9
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 8.1e-66 254.6 175 74.9
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 8.9e-65 251.1 225 52.9
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 4.4e-64 248.8 232 54.3
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.4e-62 243.8 146 83.6
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 1.1e-59 234.2 206 60.2
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 2.1e-58 229.9 180 66.7
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 9.3e-54 214.5 150 69.3
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 1.8e-44 183.7 112 75.9
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 4.3e-43 179.1 119 73.1
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 1.3e-42 177.6 133 71.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 7.9e-37 158.3 91 83.5
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 1.6e-34 150.6 174 50.0
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 6.3e-34 148.7 97 75.3
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.4e-33 147.5 257 42.0
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 7.2e-30 135.2 102 67.6
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 9.4e-14 81.6 56 69.6


User provided reference genes

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