Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 0.0e+00 1189.1 730 100.0
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.1e-248 862.1 791 71.3
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 3.7e-225 785.4 726 66.0
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.3e-174 616.7 784 49.0
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 3.8e-169 599.4 727 53.1
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.4e-168 597.4 721 54.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 6.1e-167 592.0 726 50.6
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 3.4e-162 576.2 766 49.9
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.2e-159 567.8 746 49.7
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 3.6e-159 566.2 735 49.4
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 8.0e-159 565.1 758 48.2
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.2e-154 551.2 785 46.8
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 2.3e-126 457.2 617 48.8
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 9.2e-115 418.7 745 41.1
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 9.9e-109 398.7 734 39.4
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.3e-108 398.3 735 40.3
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.3e-105 387.5 736 37.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 8.6e-105 385.6 728 38.5
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 8.4e-100 369.0 753 38.1
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 7.1e-99 365.9 771 37.0
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.2e-98 365.2 735 37.6
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.2e-98 365.2 797 36.3
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 3.5e-98 363.6 738 37.4
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.9e-97 360.1 734 37.5
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.1e-95 354.4 747 37.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-94 352.1 784 36.0
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.4e-94 351.7 772 36.0
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.8e-94 351.3 727 36.6
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.2e-93 348.6 728 38.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.7e-92 344.7 737 36.1
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.7e-92 344.7 757 36.7
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-91 342.0 760 36.1
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.4e-91 341.7 768 35.9
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.6e-90 338.2 752 37.1
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.7e-90 337.4 785 35.8
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.0e-89 335.5 751 35.2
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.3e-89 335.1 738 35.8
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.3e-89 335.1 738 35.5
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.3e-89 335.1 722 38.0
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.3e-89 334.3 790 35.1
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.9e-88 331.3 734 37.9
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.5e-88 330.9 778 35.7
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 5.6e-88 329.7 778 35.6
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.8e-87 326.6 765 34.4
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.1e-86 325.5 799 35.7
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.0e-86 322.4 744 34.9
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.8e-85 319.7 781 33.8
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 7.6e-85 319.3 729 35.7
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.4e-84 316.2 778 34.1
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.4e-83 315.1 735 36.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.4e-83 314.3 734 35.7
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.1e-82 311.2 720 34.6
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.0e-81 308.9 746 37.1
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.8e-81 308.1 751 34.5
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.8e-81 308.1 739 34.9
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 6.7e-81 306.2 737 40.2
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.5e-80 305.1 698 35.1
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 7.4e-80 302.8 772 33.8
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 4.0e-78 297.0 782 33.4
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 6.9e-78 296.2 676 36.8
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 6.4e-76 289.7 774 33.6
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 8.4e-76 289.3 717 34.2
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 4.2e-75 287.0 721 35.0
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 7.1e-75 286.2 714 34.5
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.3e-75 285.8 753 36.7
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 9.3e-75 285.8 726 34.4
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 2.1e-74 284.6 724 34.4
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 6.0e-74 283.1 777 32.7
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 8.7e-73 279.3 735 32.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.5e-72 278.5 733 33.8
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.3e-72 277.3 781 31.5
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.6e-72 275.8 766 37.7
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.6e-71 275.0 769 33.0
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.7e-71 273.9 743 31.4
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 6.2e-71 273.1 743 32.4
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 8.2e-71 272.7 729 32.6
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 8.2e-71 272.7 764 32.6
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 2.6e-69 267.7 769 32.8
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.3e-68 265.4 725 33.4
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.2e-67 260.4 808 38.5
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.6e-66 258.5 714 33.3
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.7e-66 257.7 720 32.5
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-65 255.0 717 32.1
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 3.9e-65 253.8 726 31.3
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 3.9e-65 253.8 803 30.3
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.5e-64 251.9 727 31.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.7e-64 250.0 739 32.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.2e-63 248.1 738 31.8
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.2e-63 248.1 831 39.2
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 4.8e-63 246.9 832 38.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 6.3e-63 246.5 711 32.2
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 8.2e-63 246.1 618 34.0
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.4e-62 244.6 647 32.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 5.3e-62 243.4 862 37.0
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 5.9e-61 240.0 782 30.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 2.9e-60 237.7 873 29.8
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 8.5e-60 236.1 734 30.7
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.6e-58 231.9 719 30.7
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 5.1e-57 226.9 725 30.9
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.3e-55 222.2 793 29.3
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-55 222.2 718 31.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 3.7e-55 220.7 712 33.3
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 4.8e-55 220.3 783 33.5
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 9.1e-54 216.1 847 28.5
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 5.9e-53 213.4 732 31.6
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.1e-50 204.9 703 29.4
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 6.1e-50 203.4 662 30.4
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.8e-49 201.8 704 30.0
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.3e-49 201.4 715 29.8
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.0e-49 201.1 620 32.4
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 9.1e-46 189.5 660 29.7
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.5e-45 188.7 699 29.2
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.1e-43 182.6 707 29.0
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 2.5e-43 181.4 620 29.8
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 9.4e-43 179.5 732 28.7
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 6.7e-41 173.3 691 27.4
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 5.7e-40 170.2 784 27.9
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.5e-37 160.6 891 24.4
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.9e-37 160.2 391 35.0
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.0e-33 149.4 779 26.1
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.8e-33 148.7 731 28.3
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 2.3e-33 148.3 218 43.1
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.3e-33 148.3 566 29.7
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.8e-30 138.7 661 28.9
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.6e-29 135.6 174 50.0
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 4.5e-29 134.0 292 36.3
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.2e-28 131.7 138 52.2
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 2.9e-28 131.3 423 29.3
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 8.5e-28 129.8 284 38.4
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.2e-27 127.5 285 40.4
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 7.2e-27 126.7 284 36.3
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 8.0e-26 123.2 294 39.1
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 2.8e-23 114.8 175 45.7
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 6.3e-23 113.6 341 33.1
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 8.3e-23 113.2 410 28.5
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.1e-22 112.8 359 32.0
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.4e-22 112.5 97 55.7
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.8e-22 112.1 199 39.2
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 7.0e-22 110.2 359 31.8
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.6e-21 109.0 761 23.9
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.0e-21 108.6 87 56.3
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 2.7e-21 108.2 235 37.4
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.1e-19 102.8 326 34.7
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.9e-19 102.1 338 30.8
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.9e-19 102.1 682 23.5
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 6.1e-18 97.1 390 30.3
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.4e-17 95.9 86 55.8
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.8e-17 95.5 86 55.8
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.0e-17 94.7 90 50.0
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.7e-15 89.0 85 52.9
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 6.3e-15 87.0 155 37.4
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 4.6e-13 80.9 330 30.0
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-12 79.7 191 33.5
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 5.0e-12 77.4 104 40.4
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.3e-11 74.7 114 50.0
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.7e-10 70.9 261 29.1
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.1e-10 70.5 157 35.7
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.1e-10 70.5 64 54.7
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 6.1e-10 70.5 654 23.2
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.4e-09 69.3 57 54.4
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 1.2e-08 66.2 111 42.3
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 2.9e-07 61.6 108 36.1
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.1e-06 57.8 269 27.9
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 9.2e-06 56.6 700 24.4


User provided reference genes

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