Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 2.9e-274 948.0 480 100.0
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 2.6e-158 562.8 542 54.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 6.9e-111 405.2 242 85.1
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 4.1e-95 352.8 238 74.8
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 3.5e-94 349.7 241 72.2
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.7e-93 347.4 241 73.9
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 7.2e-92 342.0 236 72.0
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 1.6e-91 340.9 238 72.3
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.6e-91 340.9 233 71.7
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 3.6e-91 339.7 193 86.5
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.1e-89 334.7 213 74.6
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.4e-87 327.0 223 69.1
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 5.3e-87 325.9 213 72.8
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.2e-86 324.7 220 69.5
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 3.5e-86 323.2 227 67.4
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.7e-85 320.9 219 68.5
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 2.2e-85 320.5 226 67.7
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 8.5e-85 318.5 223 68.2
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 8.5e-85 318.5 225 67.1
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.5e-84 317.8 222 68.5
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.9e-84 317.4 223 69.1
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.9e-84 317.4 213 69.0
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 3.2e-84 316.6 222 68.5
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 4.2e-84 316.2 223 67.7
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-83 314.3 223 68.6
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.1e-83 313.9 227 65.2
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 2.7e-83 313.5 220 68.6
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 6.1e-83 312.4 219 68.9
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.0e-82 311.6 225 65.8
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 4.0e-82 309.7 228 65.4
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 5.2e-82 309.3 220 66.8
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.2e-82 309.3 232 64.2
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.2e-82 309.3 232 64.2
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.8e-82 308.5 232 64.2
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.2e-81 308.1 224 66.5
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.2e-81 308.1 227 66.1
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.0e-81 307.4 224 67.0
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.6e-81 307.0 220 67.3
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.6e-81 307.0 232 63.8
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 4.4e-81 306.2 227 68.3
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 5.7e-81 305.8 253 59.3
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 7.5e-81 305.4 224 66.5
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 3.7e-80 303.1 227 64.3
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 3.7e-80 303.1 222 65.8
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 4.8e-80 302.8 212 68.9
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 4.8e-80 302.8 218 64.2
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 8.3e-80 302.0 220 65.5
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.8e-79 300.8 221 67.0
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 2.4e-79 300.4 220 64.5
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 2.4e-79 300.4 221 66.1
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 4.1e-79 299.7 219 67.1
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 5.4e-79 299.3 223 65.0
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 9.1e-79 298.5 234 62.8
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.2e-78 298.1 223 65.9
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.6e-78 297.7 228 63.6
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.6e-78 297.7 212 66.0
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 2.0e-78 297.4 224 63.8
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 2.7e-78 297.0 160 89.4
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.5e-78 296.6 224 65.6
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.5e-78 296.6 220 65.5
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 3.5e-78 296.6 225 64.9
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 4.5e-78 296.2 223 65.9
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 7.7e-78 295.4 217 64.5
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.7e-77 294.3 217 64.5
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.2e-77 293.9 222 64.9
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.2e-77 293.9 218 62.8
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 2.9e-77 293.5 224 66.1
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.9e-77 293.5 228 62.3
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.9e-77 293.5 224 66.1
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 2.9e-77 293.5 227 62.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.5e-76 291.2 226 60.6
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.5e-76 290.4 228 61.0
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 4.2e-76 289.7 228 61.4
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 7.2e-76 288.9 228 61.0
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.6e-75 287.7 202 67.8
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.7e-75 287.0 220 60.5
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.7e-75 286.2 214 65.0
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 8.0e-75 285.4 226 60.2
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.0e-74 285.0 222 63.1
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.4e-74 284.6 228 59.2
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.8e-74 284.3 230 59.6
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 5.2e-74 282.7 228 59.2
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 2.6e-73 280.4 230 60.4
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 3.4e-73 280.0 227 59.0
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.4e-73 279.6 228 59.6
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 5.7e-73 279.3 228 59.2
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 5.7e-73 279.3 212 65.6
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 7.5e-73 278.9 228 58.8
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 7.5e-73 278.9 228 58.8
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 9.8e-73 278.5 253 56.1
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.7e-72 277.7 228 59.6
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.2e-72 277.3 228 58.3
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.2e-72 277.3 228 58.3
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.2e-72 277.3 228 58.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.2e-72 277.3 228 59.2
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 2.2e-72 277.3 224 63.4
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.8e-72 276.9 229 59.0
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.9e-72 276.2 226 58.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 8.3e-72 275.4 228 57.5
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.8e-71 274.2 228 57.5
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.8e-71 274.2 228 57.5
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 9.2e-71 271.9 228 57.0
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 9.2e-71 271.9 228 57.0
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.0e-70 270.8 228 58.3
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 4.5e-70 269.6 228 57.0
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 4.5e-70 269.6 229 57.6
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 5.9e-70 269.2 267 53.9
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 2.9e-69 266.9 227 59.5
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.8e-69 266.5 185 68.6
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.1e-68 265.0 208 63.5
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.1e-68 265.0 208 63.5
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.9e-68 264.2 282 50.7
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.5e-68 263.8 246 56.9
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 3.3e-68 263.5 202 65.3
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 4.3e-68 263.1 226 57.1
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.6e-67 261.2 189 66.7
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.6e-67 260.0 226 56.2
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 4.7e-67 259.6 224 59.4
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.8e-66 257.7 223 53.8
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 8.9e-66 255.4 219 60.3
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.5e-65 254.6 217 58.5
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.1e-63 248.4 193 59.6
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.2e-63 246.9 225 54.2
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.2e-63 246.9 205 57.1
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 9.2e-63 245.4 230 53.5
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 9.2e-63 245.4 230 53.5
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 1.2e-62 245.0 197 58.4
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.5e-62 243.4 196 60.2
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 4.6e-62 243.0 120 98.3
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.2e-57 228.4 158 70.3
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 4.4e-57 226.5 204 55.9
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.4e-55 220.7 230 49.6
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 3.0e-53 213.8 179 60.3
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.0e-53 213.8 240 48.8
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 9.5e-52 208.8 209 47.8
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 3.6e-51 206.8 215 48.8
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 3.1e-50 203.8 150 64.0
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 2.0e-49 201.1 157 63.1
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 1.3e-48 198.4 215 48.8
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.7e-48 196.8 220 48.6
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 3.2e-47 193.7 177 57.1
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 4.6e-46 189.9 212 44.8
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 7.8e-46 189.1 120 75.0
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.6e-45 186.0 233 45.9
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.3e-44 183.7 148 57.4
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 4.6e-38 163.3 187 44.9
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 6.2e-35 152.9 117 61.5
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.1e-31 142.1 86 80.2
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 6.6e-29 132.9 147 44.2
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.7e-29 132.5 124 54.0
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 2.8e-27 127.5 91 65.9
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.9e-23 114.8 207 31.9
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.1e-20 105.5 73 64.4
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 2.2e-16 91.3 65 72.3
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.9e-16 90.9 164 35.4
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.9e-16 90.9 164 35.4
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 4.9e-16 90.1 76 51.3
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.9e-16 90.1 80 53.8
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.1e-10 72.4 68 51.5
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 3.4e-09 67.4 47 61.7
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 6.5e-08 63.2 59 54.2


User provided reference genes

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