Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 2.4e-219 765.4 442 100.0
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 6.1e-130 468.4 422 65.4
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 6.3e-127 458.4 421 66.3
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 5.9e-125 451.8 427 65.3
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 2.1e-122 443.4 427 62.1
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 4.4e-120 435.6 411 66.7
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 2.1e-98 363.6 320 64.4
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 4.6e-93 345.9 438 50.5
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.1e-91 341.3 343 58.3
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 3.8e-87 326.2 428 50.0
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 2.4e-86 323.6 422 49.1
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 1.2e-85 321.2 401 51.6
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 1.2e-85 321.2 401 51.6
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 8.7e-84 315.1 321 57.0
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 3.0e-68 263.5 399 45.6
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 2.1e-61 240.7 381 44.4
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 2.7e-61 240.4 394 41.4
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 1.0e-60 238.4 400 41.0
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 5.1e-60 236.1 325 47.1
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 5.1e-60 236.1 278 50.7
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 1.9e-59 234.2 333 43.5
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 4.3e-59 233.0 288 49.7
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 1.6e-58 231.1 341 44.9
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 1.6e-58 231.1 381 43.0
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 2.2e-58 230.7 333 44.7
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 3.7e-58 229.9 342 43.9
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 1.1e-57 228.4 397 43.6
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 3.1e-57 226.9 435 38.6
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 9.0e-57 225.3 410 41.0
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 1.5e-56 224.6 419 39.1
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.5e-56 224.6 281 49.1
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 2.6e-56 223.8 290 46.9
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 5.9e-56 222.6 279 50.2
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 5.9e-56 222.6 370 41.6
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 5.9e-56 222.6 287 46.7
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.3e-55 221.5 415 38.6
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.2e-55 220.7 406 38.7
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.9e-55 220.3 282 46.1
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 8.5e-55 218.8 282 46.1
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 8.5e-55 218.8 332 41.0
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.1e-54 218.4 326 44.2
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.1e-54 218.4 326 43.3
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.1e-54 218.4 415 38.1
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 4.2e-54 216.5 398 39.7
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.5e-54 216.1 276 47.8
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.5e-54 216.1 276 47.8
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.5e-54 216.1 421 37.8
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.5e-54 216.1 425 38.1
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 7.2e-54 215.7 284 46.5
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.1e-53 214.2 348 41.4
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 3.6e-53 213.4 389 40.6
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 7.9e-53 212.2 399 40.6
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.0e-52 210.3 270 48.1
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.9e-52 209.9 332 41.9
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 6.7e-52 209.1 283 45.6
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 9.7e-51 205.3 256 52.0
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.3e-50 204.9 284 44.0
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.3e-50 204.9 263 47.5
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 3.7e-50 203.4 282 42.9
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 2.4e-49 200.7 281 43.8
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 3.1e-49 200.3 286 44.8
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.1e-49 199.9 283 44.2
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 6.9e-49 199.1 277 46.2
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 9.1e-49 198.7 290 45.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 9.1e-49 198.7 377 37.9
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 3.4e-48 196.8 378 38.1
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 5.9e-48 196.1 291 45.0
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 5.9e-48 196.1 276 46.4
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 5.9e-48 196.1 278 45.7
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 2.9e-47 193.7 428 35.3
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 3.8e-47 193.4 389 36.8
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 5.0e-47 193.0 282 43.3
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.1e-46 191.8 297 41.8
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.1e-46 191.8 370 39.2
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.4e-46 191.4 278 41.7
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 1.9e-46 191.0 280 41.8
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 2.5e-46 190.7 410 34.6
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 4.2e-46 189.9 280 44.6
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 4.2e-46 189.9 382 35.9
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 5.5e-46 189.5 311 39.5
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 5.5e-46 189.5 266 44.4
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 2.7e-45 187.2 285 41.8
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 2.7e-45 187.2 287 41.8
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 5.1e-44 183.0 327 39.8
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 3.3e-43 180.3 290 42.1
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.4e-43 179.9 283 40.6
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 5.7e-43 179.5 232 45.3
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 7.4e-43 179.1 285 40.7
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 9.7e-43 178.7 340 38.2
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.8e-42 177.2 285 41.1
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 2.4e-41 174.1 425 35.5
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 5.3e-41 172.9 283 42.4
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.5e-40 170.2 256 43.0
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 3.5e-40 170.2 290 41.7
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 5.9e-40 169.5 280 41.4
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 7.7e-40 169.1 341 37.5
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.0e-39 168.7 275 41.5
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.7e-39 167.9 290 42.4
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 2.9e-39 167.2 285 42.1
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 3.8e-39 166.8 201 48.8
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 2.5e-38 164.1 432 36.3
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 3.2e-38 163.7 288 41.3
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 3.2e-38 163.7 433 35.1
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 5.5e-38 162.9 260 42.3
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 5.5e-38 162.9 260 42.3
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 1.2e-37 161.8 281 40.6
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 1.2e-37 161.8 288 41.0
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 1.2e-37 161.8 281 40.6
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 3.0e-36 157.1 289 36.7
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 3.3e-35 153.7 265 37.0
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 9.7e-35 152.1 251 40.6
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 6.3e-34 149.4 284 35.6
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 2.4e-33 147.5 291 36.1
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 7.7e-32 142.5 210 42.9
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 2.9e-31 140.6 254 42.5
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 3.8e-31 140.2 283 36.0
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 6.8e-28 129.4 292 33.6
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 4.8e-26 123.2 279 31.9
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 9.1e-25 119.0 123 48.0
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 4.7e-21 106.7 228 37.3
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 2.0e-19 101.3 162 32.7
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.1e-17 95.5 273 34.1
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.1e-14 85.5 283 26.1
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.0e-12 79.0 256 30.5
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 3.0e-12 77.4 280 26.8
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.4e-09 68.6 184 34.2
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 1.6e-08 65.1 239 27.2
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 1.7e-07 61.6 31 77.4
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 5.6e-06 56.6 32 65.6


User provided reference genes

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