Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 5.4e-268 927.2 493 100.0
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 9.6e-217 756.9 536 76.1
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 6.9e-215 750.7 535 76.8
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 5.1e-202 708.0 540 72.6
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.2e-197 692.6 539 69.6
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 3.6e-195 685.3 524 69.8
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 6.9e-191 671.0 533 67.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 4.2e-188 661.8 543 66.3
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 2.1e-187 659.4 535 66.9
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 8.0e-187 657.5 527 67.0
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 9.7e-185 650.6 525 67.0
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 7.0e-183 644.4 531 65.9
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.6e-182 643.3 536 68.3
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 2.1e-179 632.9 540 64.4
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.4e-178 630.2 522 66.1
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 5.2e-178 628.2 540 63.9
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 5.7e-177 624.8 465 70.1
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 4.0e-170 602.1 533 60.4
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 5.2e-170 601.7 533 60.8
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.7e-168 596.7 526 61.4
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 4.8e-168 595.1 521 60.7
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 2.7e-166 589.3 535 58.3
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.3e-165 587.0 519 60.3
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 2.3e-165 586.3 522 60.7
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.5e-164 583.6 526 59.5
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 3.3e-164 582.4 524 59.5
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 5.5e-164 581.6 524 58.8
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 5.5e-164 581.6 519 59.2
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.1e-163 579.7 524 58.2
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.8e-163 579.3 530 59.4
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.7e-163 578.6 524 57.8
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 6.1e-163 578.2 520 59.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.3e-162 576.2 536 58.8
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 3.0e-162 575.9 543 57.1
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.2e-162 575.1 464 68.5
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 5.2e-162 575.1 509 59.3
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 8.9e-162 574.3 542 57.0
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.2e-161 573.9 541 57.1
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.2e-161 573.9 539 57.9
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.0e-161 573.2 517 60.3
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 5.7e-161 571.6 520 58.8
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 7.5e-161 571.2 531 58.2
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.3e-160 570.5 515 58.1
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.2e-160 569.7 535 57.6
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.2e-160 569.7 518 57.3
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.2e-160 569.7 521 58.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.1e-159 567.4 525 58.5
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.4e-159 566.2 526 56.1
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.4e-159 565.1 520 57.9
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.6e-158 563.5 535 55.5
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.6e-158 563.5 522 59.0
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.0e-158 563.1 543 56.2
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 2.0e-158 563.1 543 56.7
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 4.5e-158 562.0 535 55.5
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.5e-156 556.2 518 59.1
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 3.3e-156 555.8 531 57.3
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.5e-156 554.3 537 55.9
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 8.0e-155 551.2 522 58.0
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.0e-154 550.8 493 59.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.3e-154 549.7 521 55.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 5.2e-154 548.5 516 59.1
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 8.9e-154 547.7 529 57.3
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.2e-153 547.4 519 55.9
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.5e-153 547.0 508 57.9
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.5e-153 547.0 520 58.5
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.8e-153 545.0 529 56.0
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.7e-152 543.5 524 57.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.2e-152 543.1 479 59.9
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.1e-151 540.8 532 55.3
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.4e-151 539.7 536 56.0
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 7.0e-151 538.1 479 59.5
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.2e-150 537.3 528 56.2
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.6e-150 537.0 514 56.6
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 7.8e-150 534.6 510 55.5
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.0e-149 532.7 514 56.6
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 4.3e-148 528.9 460 60.2
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 4.3e-148 528.9 523 55.4
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 5.6e-148 528.5 524 55.3
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 5.6e-148 528.5 524 55.3
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 5.6e-148 528.5 524 55.3
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 5.6e-148 528.5 525 56.8
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 9.5e-148 527.7 533 55.3
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.1e-147 526.6 540 55.2
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 4.7e-147 525.4 530 55.7
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 4.7e-147 525.4 461 60.5
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 6.2e-147 525.0 524 55.9
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.1e-146 524.2 529 55.2
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.4e-146 523.9 541 54.7
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.4e-146 523.9 503 56.1
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-146 523.5 532 54.7
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 3.1e-146 522.7 532 54.7
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 4.0e-146 522.3 541 54.7
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 6.8e-146 521.5 520 56.0
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.2e-145 520.8 529 55.4
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.6e-145 519.6 529 54.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.6e-145 519.6 529 54.4
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.6e-145 519.6 529 54.4
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.4e-145 518.8 526 54.6
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 5.8e-145 518.5 532 54.7
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.8e-145 518.5 478 57.9
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-144 516.9 532 54.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 2.2e-144 516.5 529 54.8
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 2.9e-144 516.2 532 54.7
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 3.7e-144 515.8 536 54.1
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 4.9e-144 515.4 520 54.6
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 6.4e-144 515.0 521 54.9
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 3.5e-142 509.2 526 54.8
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.0e-141 507.7 540 53.9
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-138 497.7 517 54.5
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.6e-134 483.8 434 60.1
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.3e-132 475.7 533 48.8
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 8.9e-130 468.0 394 64.5
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.2e-129 467.6 457 54.5
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.0e-129 466.8 386 64.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.2e-127 459.1 449 56.1
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.7e-125 453.8 520 48.1
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.7e-120 437.2 535 46.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.1e-118 430.3 487 47.2
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 4.3e-116 422.5 425 53.6
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.6e-110 404.1 388 55.4
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 6.7e-109 398.7 386 55.2
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.6e-105 385.2 385 53.8
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.5e-92 343.6 359 51.8
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.1e-90 338.2 472 40.9
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.8e-90 337.4 251 66.5
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 3.4e-89 333.2 528 37.9
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.4e-87 327.8 224 73.2
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 7.2e-87 325.5 456 41.7
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.5e-84 317.8 248 63.3
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 6.5e-80 302.4 546 35.3
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.5e-79 300.4 342 49.1
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.1e-76 291.6 543 31.9
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.9e-71 274.2 173 76.9
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 9.4e-71 271.9 184 77.7
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 8.0e-70 268.9 200 69.5
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.1e-62 244.2 196 62.2
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 2.8e-51 207.2 155 67.7
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 8.9e-45 185.7 134 70.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-43 181.4 134 71.6
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-42 178.3 151 64.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.3e-40 171.0 151 60.3
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 3.4e-28 130.6 71 91.5
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 5.4e-26 123.2 150 44.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.3e-24 118.6 110 56.4
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-22 112.1 194 39.2
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 6.2e-22 109.8 155 45.8
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 9.9e-20 102.4 74 70.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.9e-18 98.2 65 69.2
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 3.1e-13 80.9 67 56.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 3.1e-13 80.9 67 56.7
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.9e-11 74.3 489 21.3
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 3.8e-11 73.9 46 80.4
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 5.1e-08 63.5 46 65.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 3.3e-07 60.8 52 57.7
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.6e-06 57.4 46 60.9


User provided reference genes

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