Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3038 Trifolium pratense HOM05D002553 ORTHO05D002767 1.3e-128 463.0 219 100.0
Medtr1g083370 Medicago truncatula HOM05D002553 ORTHO05D002767 7.6e-81 304.3 201 75.1
Psat6g149240 Pisum sativum HOM05D002553 ORTHO05D002767 1.7e-80 303.1 201 74.1
Medtr1g082470 Medicago truncatula HOM05D002553 ORTHO05D002767 1.2e-78 297.0 201 72.6
Lj5g0009152 Lotus japonicus HOM05D002553 ORTHO05D002767 3.9e-77 292.0 201 71.1
TPR.G2739 Trifolium pratense HOM05D002553 ORTHO05D002767 5.1e-77 291.6 201 70.6
Glyma.03G240100 Glycine max HOM05D002553 ORTHO05D002767 6.9e-74 281.2 201 69.2
Lalb_Chr18g0045531 Lupinus albus HOM05D002553 ORTHO05D002767 5.8e-73 278.1 201 67.2
Glyma.19G237000 Glycine max HOM05D002553 ORTHO05D002767 3.8e-72 275.4 201 67.7
Ca_10093_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 5.5e-71 271.6 201 65.2
Haze_04233 Corylus avellana HOM05D002553 ORTHO05D002767 2.1e-70 269.6 201 63.7
VMungo0540G1597 Vigna mungo HOM05D002553 ORTHO05D002767 2.7e-70 269.2 201 67.7
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 4.6e-70 268.5 201 65.2
Phvul.006G093911 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.0e-69 267.3 201 66.7
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 2.3e-69 266.2 201 62.2
BolC1t05708H Brassica oleracea HOM05D002553 ORTHO05D002767 9.6e-68 260.8 201 61.7
Dinv22901 Davidia involucrata HOM05D002553 ORTHO05D002767 9.6e-68 260.8 201 62.2
MD04G1209000 Malus domestica HOM05D002553 ORTHO05D002767 9.6e-68 260.8 201 63.2
arahy.Tifrunner.gnm1.ann1.7PL8A0 Arachis hypogaea HOM05D002553 ORTHO05D002767 1.3e-67 260.4 202 64.9
COL.COLO4_13515 Corchorus olitorius HOM05D002553 ORTHO05D002767 1.6e-67 260.0 201 61.7
CiPaw.07G014800 Carya illinoinensis HOM05D002553 ORTHO05D002767 2.1e-67 259.6 201 62.7
QL03p004498 Quercus lobata HOM05D002553 ORTHO05D002767 4.8e-67 258.5 201 61.7
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 6.2e-67 258.1 201 61.7
Dinv23976 Davidia involucrata HOM05D002553 ORTHO05D002767 8.1e-67 257.7 201 61.7
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 1.1e-66 257.3 201 62.2
THA.LOC104802808 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.8e-66 256.5 201 60.7
BraSC132t45517Z Brassica rapa HOM05D002553 ORTHO05D002767 3.1e-66 255.8 201 61.2
Cpa.g.sc48.14 Carica papaya HOM05D002553 ORTHO05D002767 3.1e-66 255.8 201 63.2
Potri.005G039100 Populus trichocarpa HOM05D002553 ORTHO05D002767 3.1e-66 255.8 201 61.2
arahy.Tifrunner.gnm1.ann1.0VD1AP Arachis hypogaea HOM05D002553 ORTHO05D002767 4.0e-66 255.4 202 64.4
Gohir.A13G107100 Gossypium hirsutum HOM05D002553 ORTHO05D002767 4.0e-66 255.4 201 61.2
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 5.3e-66 255.0 201 61.2
Thecc.05G308000 Theobroma cacao HOM05D002553 ORTHO05D002767 5.3e-66 255.0 201 62.2
TAR362G0623 Trochodendron aralioides HOM05D002553 ORTHO05D002767 5.3e-66 255.0 201 61.7
CARHR079530 Cardamine hirsuta HOM05D002553 ORTHO05D002767 9.0e-66 254.2 201 60.7
Gorai.013G123700 Gossypium raimondii HOM05D002553 ORTHO05D002767 9.0e-66 254.2 201 61.2
Hma1.2p1_0666F.1_g199470 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 9.0e-66 254.2 201 60.7
Sabra05G0037500 Salix brachista HOM05D002553 ORTHO05D002767 9.0e-66 254.2 200 61.5
Ah.06g190110 Amaranthus hybridus HOM05D002553 ORTHO05D002767 2.0e-65 253.1 201 60.7
Gohir.D13G110400 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.0e-65 253.1 201 61.2
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 4.5e-65 251.9 201 60.7
Sp3g04040 Schrenkiella parvula HOM05D002553 ORTHO05D002767 5.8e-65 251.5 201 60.2
AT3G05190 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 7.6e-65 251.1 201 59.7
BcaNung04368 Brassica carinata HOM05D002553 ORTHO05D002767 7.6e-65 251.1 202 61.9
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 7.6e-65 251.1 201 62.2
AUR62005107 Chenopodium quinoa HOM05D002553 ORTHO05D002767 1.0e-64 250.8 201 60.7
Nn4g26152 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.0e-64 250.8 201 59.7
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.3e-64 250.4 202 61.9
AUR62000869 Chenopodium quinoa HOM05D002553 ORTHO05D002767 1.3e-64 250.4 201 60.7
CsaV3_2G004990 Cucumis sativus L. HOM05D002553 ORTHO05D002767 1.3e-64 250.4 201 61.2
TWI12G0069 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 1.3e-64 250.4 201 57.7
Carub.0003s0444 Capsella rubella HOM05D002553 ORTHO05D002767 1.7e-64 250.0 201 60.2
BcaB04g21368 Brassica carinata HOM05D002553 ORTHO05D002767 2.2e-64 249.6 201 59.2
MELO3C004297.2 Cucumis melo HOM05D002553 ORTHO05D002767 2.2e-64 249.6 201 60.7
Sc09g0003340 Simmondsia chinensis HOM05D002553 ORTHO05D002767 2.9e-64 249.2 201 59.7
BNapus_Darmor_BZH_scaffold_114p00250 Brassica napus HOM05D002553 ORTHO05D002767 3.8e-64 248.8 201 60.2
Prupe.6G330000 Prunus persica HOM05D002553 ORTHO05D002767 3.8e-64 248.8 201 61.7
TPR.G3095 Trifolium pratense HOM05D002553 ORTHO05D002767 4.9e-64 248.4 184 69.0
AL3G15610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 1.1e-63 247.3 201 59.2
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 1.1e-63 247.3 201 60.7
Hund07047 Selenicereus undatus HOM05D002553 ORTHO05D002767 1.1e-63 247.3 202 58.9
Atru.chr2.475 Acer truncatum HOM05D002553 ORTHO05D002767 1.4e-63 246.9 201 58.7
Aqoxy5G00545 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 2.5e-63 246.1 201 59.2
BcaNung02463 Brassica carinata HOM05D002553 ORTHO05D002767 2.5e-63 246.1 202 60.9
AL6G39600 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 3.2e-63 245.7 202 60.9
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 3.2e-63 245.7 202 60.4
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 3.2e-63 245.7 202 60.4
Aa31LG5G15560 Aethionema arabicum HOM05D002553 ORTHO05D002767 5.5e-63 245.0 202 59.4
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 5.5e-63 245.0 202 60.4
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 5.5e-63 245.0 202 60.4
Solyc01g098700.4 Solanum lycopersicum HOM05D002553 ORTHO05D002767 7.1e-63 244.6 202 59.4
Thhalv10020427m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 1.2e-62 243.8 201 58.2
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 3.5e-62 242.3 200 57.5
FAN14G5684 Fragaria x ananassa HOM05D002553 ORTHO05D002767 3.5e-62 242.3 201 57.7
RcHm_v2.0_Chr3g0454121 Rosa chinensis HOM05D002553 ORTHO05D002767 3.5e-62 242.3 201 58.7
vmacro19641 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 3.5e-62 242.3 201 60.2
CARHR186010 Cardamine hirsuta HOM05D002553 ORTHO05D002767 4.6e-62 241.9 202 59.9
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 6.0e-62 241.5 201 58.2
CAN.G1134.23 Capsicum annuum HOM05D002553 ORTHO05D002767 1.8e-61 240.0 201 57.7
FvH4_6g05350 Fragaria vesca HOM05D002553 ORTHO05D002767 1.8e-61 240.0 201 57.2
Sopen01g042240 Solanum pennellii HOM05D002553 ORTHO05D002767 1.8e-61 240.0 202 58.4
Carub.0006s2513 Capsella rubella HOM05D002553 ORTHO05D002767 2.3e-61 239.6 201 57.7
PGSC0003DMG401028577 Solanum tuberosum HOM05D002553 ORTHO05D002767 3.0e-61 239.2 202 57.9
Glyma.10G156850 Glycine max HOM05D002553 ORTHO05D002767 3.9e-61 238.8 175 66.3
Lj9C682T7 Lonicera japonica HOM05D002553 ORTHO05D002767 3.9e-61 238.8 201 58.2
MD12G1223700 Malus domestica HOM05D002553 ORTHO05D002767 5.1e-61 238.4 217 55.3
CANSAT54G1986 Cannabis sativa HOM05D002553 ORTHO05D002767 8.7e-61 237.7 201 56.7
Peaxi162Scf00434g00216 Petunia axillaris HOM05D002553 ORTHO05D002767 8.7e-61 237.7 201 58.2
PGR083G1620 Punica granatum HOM05D002553 ORTHO05D002767 3.3e-60 235.7 222 54.5
A09p05260 Brassica napus HOM05D002553 ORTHO05D002767 7.4e-60 234.6 204 55.9
PSO210G1325 Papaver somniferum HOM05D002553 ORTHO05D002767 1.3e-59 233.8 201 57.2
ECA247G0575 Erigeron canadensis HOM05D002553 ORTHO05D002767 4.8e-59 231.9 202 57.9
DCAR_003314 Daucus carota HOM05D002553 ORTHO05D002767 8.2e-59 231.1 201 56.2
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.1e-58 230.7 208 54.8
Migut.B01190 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.8e-58 229.9 201 56.7
ATR0626G263 Amborella trichopoda HOM05D002553 ORTHO05D002767 9.0e-58 227.6 204 54.9
BcaC04g23681 Brassica carinata HOM05D002553 ORTHO05D002767 4.5e-57 225.3 201 54.2
Cc02_g32710 Coffea canephora HOM05D002553 ORTHO05D002767 4.5e-57 225.3 201 57.2
TAR636G3134 Trochodendron aralioides HOM05D002553 ORTHO05D002767 4.5e-57 225.3 201 55.7
Zm00001eb017520 Zea mays HOM05D002553 ORTHO05D002767 2.2e-56 223.0 201 52.7
Eucgr.B02001 Eucalyptus grandis HOM05D002553 ORTHO05D002767 2.9e-56 222.6 201 54.2
FAN09G0499 Fragaria x ananassa HOM05D002553 ORTHO05D002767 5.0e-56 221.9 210 53.3
HPP92_001339 Vanilla planifolia HOM05D002553 ORTHO05D002767 8.5e-56 221.1 145 67.6
HanXRQChr02g0037091 Helianthus annuus HOM05D002553 ORTHO05D002767 2.5e-55 219.5 202 55.9
MSTRG.16977 Avicennia marina HOM05D002553 ORTHO05D002767 3.0e-53 212.6 201 52.7
Lsat_1_v5_gn_1_25020 Lactuca sativa HOM05D002553 ORTHO05D002767 8.7e-53 211.1 202 52.5
SalBow5G4087 Salvia bowleyana HOM05D002553 ORTHO05D002767 2.5e-52 209.5 201 54.7
BraA09t36165Z Brassica rapa HOM05D002553 ORTHO05D002767 4.3e-52 208.8 220 49.5
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 6.3e-51 204.9 201 52.2
C09p05740 Brassica napus HOM05D002553 ORTHO05D002767 1.4e-50 203.8 204 51.5
BolC9t53501H Brassica oleracea HOM05D002553 ORTHO05D002767 1.4e-50 203.8 204 51.5
SGA_v2.0_scaffold43G16279 Striga asiatica HOM05D002553 ORTHO05D002767 9.1e-50 201.1 226 47.8
MSTRG.5079 Avicennia marina HOM05D002553 ORTHO05D002767 2.2e-48 196.4 201 48.8
Rhsim05G0144300 Rhododendron simsii HOM05D002553 ORTHO05D002767 7.4e-44 181.4 203 52.2
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.8e-43 179.5 145 58.6
Mapoly0006s0260 Marchantia polymorpha HOM05D002553 ORTHO05D002767 5.3e-42 175.3 202 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2814 Anthoceros agrestis HOM05D002553 ORTHO05D002767 5.9e-41 171.8 201 43.3
TAR636G3242 Trochodendron aralioides HOM05D002553 ORTHO05D002767 8.5e-40 167.9 119 65.5
SMO356G0084 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 2.1e-38 163.3 202 45.5
Pp3c16_17790 Physcomitrium patens HOM05D002553 ORTHO05D002767 7.4e-36 154.8 202 39.1
Pp3c6_5420 Physcomitrium patens HOM05D002553 ORTHO05D002767 3.1e-34 149.4 204 40.2
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 4.2e-31 139.0 214 39.3
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 4.2e-31 139.0 214 39.3
Oeu004302.1 Olea europaea HOM05D002553 ORTHO05D002767 2.1e-30 136.7 102 64.7
Nitab4.5_0004271g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 2.7e-30 136.3 201 40.8
Oeu012095.1 Olea europaea HOM05D002553 ORTHO05D002767 3.6e-30 136.0 101 62.4
Nitab4.5_0006809g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 6.1e-30 135.2 201 40.3
Migut.N01859 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.9e-23 113.6 148 44.6
Haze_21959 Corylus avellana HOM05D002553 ORTHO05D002767 1.8e-21 107.1 64 79.7
Cre10.g458050 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 8.8e-21 104.8 182 35.7
CSS0016581 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 6.3e-19 98.6 65 75.4
CSS0026671 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.1e-18 97.8 64 76.6
Oeu013074.1 Olea europaea HOM05D002553 ORTHO05D002767 4.1e-18 95.9 97 52.6
HPP92_001399 Vanilla planifolia HOM05D002553 ORTHO05D002767 1.6e-17 94.0 58 69.0
EL10As2g23202 Beta vulgaris HOM05D002553 ORTHO05D002767 1.3e-16 90.9 65 64.6
MCO02G411 Micromonas commoda HOM05D002553 ORTHO05D002767 8.5e-16 88.2 94 44.7
BcaC04g23682 Brassica carinata HOM05D002553 ORTHO05D002767 1.2e-14 84.3 105 42.9
CSS0036549 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 2.1e-14 83.6 78 50.0
SEGI_02207 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 7.0e-10 68.6 82 43.9
Medtr8g036730 Medicago truncatula HOM05D002553 ORTHO05D002767 7.3e-07 58.5 85 43.5


User provided reference genes

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