Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.8e-150 535.8 259 100.0
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 6.5e-140 500.7 259 91.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 2.8e-135 485.3 259 89.6
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 3.3e-131 471.9 259 87.3
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 2.2e-127 459.1 261 85.8
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.5e-123 446.4 279 78.5
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 2.2e-119 432.6 259 79.9
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 6.0e-109 397.9 221 83.3
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 4.3e-107 391.7 219 84.9
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 5.2e-105 384.8 258 69.8
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.6e-104 382.5 258 70.2
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 7.3e-99 364.4 262 68.3
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.4e-97 360.1 259 67.2
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.8e-97 359.8 259 65.3
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 2.4e-97 359.4 260 66.2
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 3.1e-97 359.0 200 83.5
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 3.1e-97 359.0 257 66.5
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 2.0e-96 356.3 259 66.0
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 3.4e-96 355.5 260 65.4
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 4.4e-96 355.1 259 65.6
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 2.9e-95 352.4 255 65.5
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.4e-94 350.1 260 64.6
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.9e-94 349.7 257 63.0
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.9e-94 349.7 258 66.7
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 9.2e-94 347.4 258 64.7
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.7e-92 343.2 258 62.0
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 3.3e-91 339.0 257 60.7
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 5.6e-91 338.2 259 62.9
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.6e-90 336.7 259 62.5
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.8e-90 335.9 221 71.0
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 4.7e-90 335.1 257 62.6
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 4.0e-89 332.0 262 63.7
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 9.0e-89 330.9 259 61.8
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.2e-88 330.5 258 61.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-88 330.1 209 71.8
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.5e-88 330.1 261 61.7
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.5e-88 330.1 259 61.0
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.0e-88 329.7 208 71.6
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.6e-88 329.3 262 62.2
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 2.6e-88 329.3 296 55.4
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.4e-88 328.9 259 61.4
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.4e-88 328.6 259 61.4
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 5.8e-88 328.2 259 60.6
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.7e-87 326.6 257 61.1
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.7e-87 326.6 257 61.5
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.8e-87 325.5 221 65.6
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.9e-87 325.1 262 61.5
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.9e-87 325.1 262 61.5
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.9e-87 325.1 259 59.5
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.4e-86 323.6 257 59.9
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 3.2e-86 322.4 257 59.5
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.2e-86 322.4 259 60.2
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 3.2e-86 322.4 259 60.2
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 7.1e-86 321.2 258 57.8
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 9.3e-86 320.9 262 61.1
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.2e-85 320.5 258 57.0
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 2.1e-85 319.7 262 62.2
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.8e-85 317.8 271 57.2
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.7e-84 316.6 251 62.2
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 3.0e-84 315.8 258 58.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.9e-84 315.5 254 61.4
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.1e-84 315.1 257 58.8
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 2.5e-83 312.8 265 64.9
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 3.3e-83 312.4 258 57.4
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.1e-82 309.7 289 55.7
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.8e-82 309.3 259 56.4
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.6e-82 308.9 241 61.8
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 6.2e-82 308.1 258 58.9
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.8e-81 306.6 238 61.3
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.4e-81 306.2 257 57.6
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 4.0e-81 305.4 238 61.3
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.2e-80 303.9 261 56.3
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.2e-80 303.9 259 58.3
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 7.6e-80 301.2 258 57.4
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 9.9e-80 300.8 260 57.7
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 9.9e-80 300.8 278 54.0
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.7e-79 300.1 281 54.8
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 1.7e-79 300.1 261 60.2
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.9e-79 299.3 258 56.6
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 6.4e-79 298.1 326 48.5
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.4e-78 297.0 257 56.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 9.3e-78 294.3 261 55.2
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.1e-77 293.1 237 58.6
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 3.5e-77 292.4 215 62.3
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.8e-76 290.0 237 57.8
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 2.3e-76 289.7 260 53.8
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 3.0e-76 289.3 254 55.9
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 3.0e-76 289.3 233 60.9
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 6.7e-76 288.1 223 57.4
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 6.7e-76 288.1 274 54.4
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.1e-75 287.3 254 55.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.5e-75 286.2 258 55.8
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 2.8e-74 282.7 241 58.9
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.2e-74 281.6 214 62.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 8.1e-74 281.2 299 49.5
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.1e-73 280.8 235 56.2
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 1.8e-73 280.0 259 54.8
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 3.8e-71 272.3 257 53.7
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.9e-70 270.0 200 63.0
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.5e-67 260.4 242 52.9
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.3e-67 259.2 168 77.4
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 3.3e-67 259.2 182 64.8
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.8e-66 256.1 257 51.8
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.4e-65 253.8 236 54.2
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 9.0e-65 251.1 304 47.4
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 3.8e-63 245.7 197 59.9
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.1e-62 241.5 184 62.5
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.9e-55 219.5 185 58.4
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 6.5e-55 218.4 248 47.6
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.4e-54 217.2 226 46.5
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 2.5e-54 216.5 175 60.6
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 7.4e-51 204.9 191 51.3
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 9.7e-51 204.5 185 51.9
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 4.8e-50 202.2 189 51.9
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 4.8e-50 202.2 195 52.3
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.2e-50 201.4 149 65.8
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 6.9e-49 198.4 216 49.5
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.5e-48 197.2 225 45.8
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.0e-48 196.8 141 61.7
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.7e-47 193.7 212 43.4
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 4.2e-46 189.1 247 42.9
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 6.1e-45 185.3 141 62.4
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.0e-44 183.0 166 56.0
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 7.4e-43 178.3 145 57.9
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.8e-39 166.0 199 43.2
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.5e-39 165.2 151 54.3
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 4.7e-37 159.1 115 62.6
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.3e-34 151.0 115 61.7
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.2e-34 150.2 220 40.5
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.4e-33 147.5 97 74.2
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 9.1e-33 144.8 130 55.4
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.2e-31 140.2 126 54.0
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.9e-31 139.8 85 74.1
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.9e-30 137.1 85 72.9
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.9e-30 137.1 221 34.4
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.5e-30 136.7 85 72.9
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.5e-30 135.6 85 71.8
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.0e-28 129.4 365 27.7
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 5.2e-28 129.0 149 47.7
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-27 127.9 108 53.7
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.7e-27 124.8 238 34.9
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.8e-25 120.6 256 30.1
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-21 107.5 66 66.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.6e-21 106.3 66 68.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.0e-20 104.8 66 66.7
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.4e-20 104.4 71 64.8
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 3.0e-20 103.2 75 58.7
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.6e-19 100.1 69 65.2
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 3.4e-19 99.8 75 54.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.2e-18 97.1 61 65.6
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.9e-14 84.0 81 53.1
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 2.5e-14 83.6 82 57.3
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.8e-13 80.1 59 61.0
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-12 78.2 85 49.4
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 3.0e-12 76.6 61 59.0
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 4.0e-12 76.3 82 53.7
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 6.3e-10 68.9 51 60.8
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.8e-09 67.4 137 34.3
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 4.5e-08 62.8 75 46.7
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.3e-07 61.2 42 61.9


User provided reference genes

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