Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 0.0e+00 1392.9 677 100.0
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 0.0e+00 1119.0 681 81.4
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 0.0e+00 1103.6 681 80.5
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 6.5e-272 940.6 694 67.9
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 6.0e-270 934.1 682 68.0
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 3.9e-269 931.4 680 71.0
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 1.6e-267 926.0 697 66.7
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 4.8e-259 897.9 677 67.2
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 8.2e-259 897.1 662 70.5
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.7e-243 846.3 673 64.5
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 5.3e-173 612.1 689 48.5
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 5.1e-168 595.5 693 45.7
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 8.2e-158 561.6 688 45.6
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.0e-155 554.7 685 45.4
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.9e-155 553.1 679 45.4
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 6.5e-155 552.0 688 45.1
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 2.7e-153 546.6 710 44.4
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 3.5e-153 546.2 688 43.8
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 3.0e-152 543.1 673 44.6
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.5e-151 540.8 667 45.6
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 2.5e-151 540.0 686 44.8
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.5e-151 540.0 718 43.5
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 1.6e-150 537.3 676 44.7
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 6.9e-149 531.9 664 45.0
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 5.0e-147 525.8 703 42.0
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 1.2e-145 521.2 685 43.5
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 1.0e-144 518.1 694 43.4
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 3.9e-144 516.2 721 41.9
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 9.7e-143 511.5 679 42.6
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 8.2e-142 508.4 611 44.7
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.2e-140 504.6 706 42.6
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 7.7e-140 501.9 680 41.8
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 4.2e-138 496.1 672 42.6
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 2.7e-137 493.4 688 41.4
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 3.6e-137 493.0 684 41.4
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.0e-136 491.5 670 42.7
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 2.0e-135 487.3 671 42.2
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.2e-134 483.8 668 42.2
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 3.8e-131 473.0 414 58.9
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.4e-128 464.5 678 41.2
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 7.0e-125 452.2 616 41.2
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 1.0e-123 448.4 668 39.8
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 3.2e-122 443.4 695 39.9
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 9.4e-122 441.8 713 38.0
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 9.4e-122 441.8 679 37.8
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 1.0e-120 438.3 677 38.1
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 4.0e-120 436.4 672 39.3
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 5.2e-120 436.0 669 37.5
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 6.7e-120 435.6 670 39.0
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 5.7e-119 432.6 680 38.8
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 1.7e-118 431.0 676 38.3
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.8e-118 430.3 639 37.9
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 2.0e-116 424.1 671 37.6
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 3.5e-116 423.3 684 36.8
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.3e-115 421.4 679 39.6
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.3e-115 421.4 648 38.1
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 1.7e-115 421.0 672 37.9
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 2.9e-115 420.2 638 40.1
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 2.9e-115 420.2 677 37.8
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.1e-114 418.3 654 39.8
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.2e-113 414.8 674 37.1
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 1.0e-112 411.8 676 36.4
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 2.3e-112 410.6 640 39.8
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 8.8e-112 408.7 664 39.0
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.4e-111 406.4 568 41.0
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 9.8e-111 405.2 661 38.0
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.3e-110 404.8 695 37.0
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 8.3e-110 402.1 539 43.4
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 2.7e-108 397.1 651 38.6
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 5.0e-107 392.9 607 39.5
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 8.6e-107 392.1 678 35.7
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.1e-106 391.7 675 37.0
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 2.1e-105 387.5 575 39.7
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 2.8e-105 387.1 645 36.7
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 4.0e-104 383.3 592 38.2
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 1.2e-103 381.7 697 35.4
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 2.0e-103 380.9 610 38.7
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 1.1e-101 375.2 739 34.2
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.8e-101 374.4 708 35.0
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 7.0e-101 372.5 690 37.0
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 3.5e-100 370.2 549 38.8
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 6.6e-99 365.9 696 35.5
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 1.0e-96 358.6 503 40.8
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 8.9e-96 355.5 623 35.3
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.4e-93 348.2 709 33.3
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 1.2e-92 345.1 671 35.3
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.5e-87 325.9 573 36.6
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 9.2e-85 318.9 626 34.8
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.0e-83 315.5 545 36.7
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 4.9e-78 296.6 441 39.9
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 7.8e-76 289.3 657 31.2
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 9.5e-74 282.3 416 38.5
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 6.2e-73 279.6 692 31.5
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 8.1e-73 279.3 692 31.5
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 7.6e-71 272.7 363 41.9
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.2e-70 271.2 437 38.0
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.5e-63 248.4 647 30.1
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 1.6e-57 228.4 394 37.1
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.2e-57 226.5 325 40.0
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 3.1e-48 197.6 291 41.9
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.4e-45 188.7 192 52.1
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 3.2e-37 161.0 369 32.2
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 4.1e-32 144.1 164 50.6
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.6e-28 132.1 191 39.3
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 5.3e-24 117.1 140 45.0
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 1.1e-21 109.4 488 25.2
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.8e-19 102.1 79 57.0
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.8e-19 102.1 79 57.0
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 5.1e-19 100.5 661 23.6
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 2.8e-17 94.7 97 48.5
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.7e-14 85.5 386 21.2
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 2.9e-14 84.7 220 28.6
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 7.2e-13 80.1 317 26.2
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 3.3e-10 71.2 46 71.7
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 1.6e-07 62.4 37 81.1
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 1.6e-07 62.4 48 64.6
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 2.6e-07 61.6 56 50.0
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.0e-06 59.7 136 34.6
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 1.0e-06 59.7 88 38.6
SEGI_32623 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.3e-06 59.3 263 20.5
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.2e-06 58.5 172 30.2


User provided reference genes

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