Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 5.5e-40 167.2 83 100.0
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.3e-22 108.6 58 91.4
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 4.0e-22 107.8 57 91.2
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.5e-21 105.9 56 91.1
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 5.7e-21 104.0 56 89.3
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 2.2e-20 102.1 56 85.7
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 4.8e-20 100.9 57 80.7
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 6.3e-20 100.5 56 87.5
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 6.3e-20 100.5 57 84.2
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 6.3e-20 100.5 57 86.0
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 8.2e-20 100.1 56 85.7
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 8.2e-20 100.1 56 85.7
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.1e-19 99.8 56 85.7
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.4e-19 99.4 56 85.7
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.4e-19 99.4 57 82.5
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.4e-19 99.4 56 83.9
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.4e-19 99.4 56 83.9
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.8e-19 99.0 57 82.5
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.8e-19 99.0 57 82.5
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.4e-19 98.6 56 85.7
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 3.1e-19 98.2 57 80.7
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.1e-19 98.2 56 82.1
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 3.1e-19 98.2 55 85.5
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 4.1e-19 97.8 56 83.9
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.1e-19 97.8 60 78.3
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 5.3e-19 97.4 56 82.1
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 5.3e-19 97.4 56 82.1
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 5.3e-19 97.4 56 82.1
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 7.0e-19 97.1 56 82.1
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 9.1e-19 96.7 55 87.3
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.2e-18 96.3 56 82.1
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.2e-18 96.3 56 82.1
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.2e-18 96.3 57 82.5
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.6e-18 95.9 56 80.4
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.6e-18 95.9 57 77.2
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.6e-18 95.9 56 82.1
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.6e-18 95.9 56 82.1
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.6e-18 95.9 56 82.1
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.6e-18 95.9 56 80.4
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.0e-18 95.5 57 80.7
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.0e-18 95.5 55 81.8
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.0e-18 95.5 55 81.8
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.0e-18 95.5 57 80.7
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 2.0e-18 95.5 57 80.7
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 2.7e-18 95.1 55 81.8
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 2.7e-18 95.1 55 83.6
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 2.7e-18 95.1 55 81.8
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.7e-18 95.1 57 77.2
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.7e-18 95.1 57 77.2
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.5e-18 94.7 57 78.9
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 4.5e-18 94.4 56 76.8
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.5e-18 94.4 57 78.9
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.5e-18 94.4 57 78.9
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 7.7e-18 93.6 57 78.9
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.7e-17 92.4 55 78.2
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 2.2e-17 92.0 57 77.2
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.9e-17 91.7 56 76.8
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.9e-17 91.7 56 80.4
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 2.9e-17 91.7 57 77.2
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 3.8e-17 91.3 57 77.2
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.0e-17 90.9 55 74.5
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.0e-17 90.9 55 74.5
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 5.0e-17 90.9 55 74.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 6.5e-17 90.5 55 80.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 6.5e-17 90.5 55 80.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 6.5e-17 90.5 55 80.0
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 6.5e-17 90.5 55 78.2
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 6.5e-17 90.5 54 79.6
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 8.5e-17 90.1 56 80.4
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.1e-16 89.7 55 78.2
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.5e-16 89.4 55 76.4
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.9e-16 89.0 55 76.4
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-16 89.0 55 76.4
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.2e-16 88.2 55 74.5
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 4.2e-16 87.8 54 77.8
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.5e-16 87.4 62 71.0
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 5.5e-16 87.4 55 76.4
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 9.4e-16 86.7 55 74.5
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.2e-15 86.3 56 71.4
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.2e-15 86.3 56 71.4
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.6e-15 85.9 55 74.5
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 2.7e-15 85.1 57 70.2
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.4e-14 82.8 56 71.4
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 2.3e-14 82.0 55 69.1
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.0e-14 81.3 54 70.4
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 5.2e-14 80.9 48 77.1
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.8e-14 80.1 55 63.6
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.2e-13 79.7 55 63.6
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.2e-13 79.7 55 65.5
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 1.5e-13 79.3 57 63.2
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 2.0e-13 79.0 55 63.6
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.6e-13 78.6 55 63.6
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.4e-13 78.2 54 72.2
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.4e-13 78.2 55 63.6
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 4.4e-13 77.8 57 64.9
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.7e-13 77.4 57 64.9
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 5.7e-13 77.4 57 63.2
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 5.7e-13 77.4 56 60.7
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.7e-13 77.4 57 64.9
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 7.5e-13 77.0 43 86.0
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 9.8e-13 76.6 55 61.8
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 9.8e-13 76.6 55 61.8
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 9.8e-13 76.6 55 63.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.3e-12 76.3 55 61.8
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.3e-12 76.3 55 61.8
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.3e-12 76.3 55 61.8
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.3e-12 76.3 41 90.2
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-12 75.9 55 61.8
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.7e-12 75.9 55 61.8
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.7e-12 75.9 55 65.5
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.7e-12 75.9 55 65.5
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.7e-12 75.9 55 63.6
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.2e-12 75.5 57 63.2
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 6.3e-12 73.9 55 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.1e-11 73.2 55 58.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-11 73.2 55 60.0
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 2.7e-10 68.6 57 57.9
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-10 68.6 57 57.9
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.7e-10 68.6 57 57.9
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.3e-09 66.2 55 45.5
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 5.0e-09 64.3 40 80.0
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 6.5e-09 63.9 37 81.1
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 6.5e-09 63.9 54 51.9
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.1e-08 63.2 32 90.6
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 4.2e-08 61.2 32 84.4
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 5.5e-08 60.8 57 57.9
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 7.2e-08 60.5 106 38.7
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 9.4e-08 60.1 32 81.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 3.6e-07 58.2 42 61.9
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 6.1e-07 57.4 32 81.2
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.0e-06 56.6 58 55.2
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.0e-06 56.6 58 55.2
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.3e-06 55.5 32 78.1
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 6.8e-06 53.9 49 44.9


User provided reference genes

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