Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30239 Trifolium pratense HOM05D003235 ORTHO05D017489 2.1e-89 332.4 179 100.0
Ca_02021_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 1.4e-56 223.4 142 80.3
Medtr2g438210 Medicago truncatula HOM05D003235 ORTHO05D003863 2.4e-56 222.6 152 75.7
Medtr4g127910 Medicago truncatula HOM05D003235 ORTHO05D003863 9.0e-56 220.7 152 74.3
Ca_25919_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 4.5e-55 218.4 152 73.0
Lj6g0023552 Lotus japonicus HOM05D003235 ORTHO05D003863 6.5e-54 214.5 152 73.0
Lalb_Chr15g0083901 Lupinus albus HOM05D003235 ORTHO05D003863 2.5e-53 212.6 152 71.7
arahy.Tifrunner.gnm1.ann1.MB0JZI Arachis hypogaea HOM05D003235 ORTHO05D003863 9.3e-53 210.7 152 71.1
Lalb_Chr20g0114201 Lupinus albus HOM05D003235 ORTHO05D003863 9.3e-53 210.7 152 69.7
arahy.Tifrunner.gnm1.ann1.5A4VTA Arachis hypogaea HOM05D003235 ORTHO05D003863 2.7e-52 209.1 152 70.4
Glyma.09G119200 Glycine max HOM05D003235 ORTHO05D003863 6.7e-51 204.5 152 68.4
Prupe.8G176600 Prunus persica HOM05D003235 ORTHO05D003863 6.7e-51 204.5 152 67.8
Phvul.003G022900 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.1e-50 203.8 152 67.8
VMungo1215G3112 Vigna mungo HOM05D003235 ORTHO05D003863 3.3e-50 202.2 152 67.1
MD10G1138100 Malus domestica HOM05D003235 ORTHO05D003863 5.7e-50 201.4 152 65.8
FvH4_2g16380 Fragaria vesca HOM05D003235 ORTHO05D003863 1.6e-49 199.9 152 66.4
FAN15G0986 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.6e-49 199.9 152 66.4
FAN24G0538 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.6e-49 199.9 152 66.4
FAN24G1371 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.6e-49 199.9 152 66.4
RcHm_v2.0_Chr6g0280151 Rosa chinensis HOM05D003235 ORTHO05D003863 2.2e-49 199.5 152 65.8
MD00G1083900 Malus domestica HOM05D003235 ORTHO05D003863 4.8e-49 198.4 152 65.1
CANSAT11G0145 Cannabis sativa HOM05D003235 ORTHO05D003863 3.1e-48 195.7 142 68.3
Ciclev10028672m.g Citrus clementina HOM05D003235 ORTHO05D003863 4.1e-48 195.3 152 67.1
PGR142G4436 Punica granatum HOM05D003235 ORTHO05D003863 1.2e-47 193.7 153 66.7
Haze_02042 Corylus avellana HOM05D003235 ORTHO05D003863 2.6e-47 192.6 151 65.6
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 5.9e-47 191.4 151 66.9
TWI31G0863 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 7.7e-47 191.0 152 65.1
VMungo0251G0657 Vigna mungo HOM05D003235 ORTHO05D003863 7.7e-47 191.0 152 65.8
COL.COLO4_24688 Corchorus olitorius HOM05D003235 ORTHO05D003863 2.2e-46 189.5 141 68.8
FvH4_5g27680 Fragaria vesca HOM05D003235 ORTHO05D003863 2.2e-46 189.5 146 65.1
Gohir.A04G125200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.1e-45 187.2 151 65.6
Gorai.012G158300 Gossypium raimondii HOM05D003235 ORTHO05D003863 1.1e-45 187.2 151 65.6
Potri.009G143200 Populus trichocarpa HOM05D003235 ORTHO05D003863 1.1e-45 187.2 152 63.8
Gohir.D04G170000 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.4e-45 186.8 151 64.9
Thecc.02G046900 Theobroma cacao HOM05D003235 ORTHO05D003863 1.4e-45 186.8 148 65.5
TWI79G1341 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 1.4e-45 186.8 152 62.5
Duzib248G1500 Durio zibethinus HOM05D003235 ORTHO05D003863 1.9e-45 186.4 148 64.9
Cpa.g.sc20.187 Carica papaya HOM05D003235 ORTHO05D003863 2.5e-45 186.0 152 63.8
Gohir.D02G230900 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.5e-45 186.0 148 64.9
Gorai.005G258500 Gossypium raimondii HOM05D003235 ORTHO05D003863 2.5e-45 186.0 148 64.9
Manes.11G106900 Manihot esculenta HOM05D003235 ORTHO05D003863 2.5e-45 186.0 152 62.5
Phvul.002G191600 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 2.5e-45 186.0 152 63.8
Potri.004G183300 Populus trichocarpa HOM05D003235 ORTHO05D003863 2.5e-45 186.0 142 66.9
Manes.04G065100 Manihot esculenta HOM05D003235 ORTHO05D003863 3.2e-45 185.7 152 64.5
Cc09_g10610 Coffea canephora HOM05D003235 ORTHO05D003863 7.2e-45 184.5 146 64.4
MELO3C013265.2 Cucumis melo HOM05D003235 ORTHO05D003863 9.4e-45 184.1 152 63.8
Rhsim05G0048800 Rhododendron simsii HOM05D003235 ORTHO05D003863 1.6e-44 183.3 146 65.1
Cc08_g00700 Coffea canephora HOM05D003235 ORTHO05D003863 2.7e-44 182.6 146 64.4
CsaV3_7G001740 Cucumis sativus L. HOM05D003235 ORTHO05D003863 2.7e-44 182.6 152 63.2
Dinv14158 Davidia involucrata HOM05D003235 ORTHO05D003863 2.7e-44 182.6 146 65.1
CSS0024694 Camellia sinensis var. sinensis HOM05D003235 ORTHO05D003863 4.6e-44 181.8 146 63.7
CiPaw.06G117700 Carya illinoinensis HOM05D003235 ORTHO05D003863 6.1e-44 181.4 152 61.2
unitig_749.g13984 Utricularia gibba HOM05D003235 ORTHO05D003863 6.1e-44 181.4 152 61.8
vmacro09726 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 7.9e-44 181.0 146 63.0
GSVIVG01023935001 Vitis vinifera HOM05D003235 ORTHO05D003863 7.9e-44 181.0 146 64.4
ClCG02G003570 Citrullus lanatus HOM05D003235 ORTHO05D003863 1.0e-43 180.6 152 62.5
CiPaw.05G089800 Carya illinoinensis HOM05D003235 ORTHO05D003863 1.4e-43 180.3 152 61.2
Gohir.A03G209200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.8e-43 179.9 148 63.5
Sed0003744 Sechium edule HOM05D003235 ORTHO05D003863 2.3e-43 179.5 154 63.0
Lj9A405T66 Lonicera japonica HOM05D003235 ORTHO05D003863 3.0e-43 179.1 146 63.0
Sopen08g030600 Solanum pennellii HOM05D003235 ORTHO05D003863 3.0e-43 179.1 146 63.0
PGSC0003DMG400012284 Solanum tuberosum HOM05D003235 ORTHO05D003863 3.0e-43 179.1 146 63.0
Solyc08g082340.3 Solanum lycopersicum HOM05D003235 ORTHO05D003863 3.9e-43 178.7 146 62.3
arahy.Tifrunner.gnm1.ann1.0G9KRE Arachis hypogaea HOM05D003235 ORTHO05D003863 5.1e-43 178.3 135 65.9
MSTRG.27622 Avicennia marina HOM05D003235 ORTHO05D003863 5.1e-43 178.3 146 63.7
arahy.Tifrunner.gnm1.ann1.S5QGNM Arachis hypogaea HOM05D003235 ORTHO05D003863 6.7e-43 177.9 135 65.2
CAN.G1235.15 Capsicum annuum HOM05D003235 ORTHO05D003863 8.8e-43 177.6 146 62.3
Actinidia20561 Actinidia chinensis HOM05D003235 ORTHO05D003863 1.1e-42 177.2 146 63.7
Ah.01g023630 Amaranthus hybridus HOM05D003235 ORTHO05D003863 1.1e-42 177.2 140 65.7
Migut.N01350 Erythranthe guttata HOM05D003235 ORTHO05D003863 1.1e-42 177.2 146 61.6
Nitab4.5_0006796g0050 Nicotiana tabacum HOM05D003235 ORTHO05D003863 2.0e-42 176.4 137 65.0
Actinidia18009 Actinidia chinensis HOM05D003235 ORTHO05D003863 2.5e-42 176.0 148 63.5
Sp7g33030 Schrenkiella parvula HOM05D003235 ORTHO05D003863 2.5e-42 176.0 154 61.7
Ah.01g007750 Amaranthus hybridus HOM05D003235 ORTHO05D003863 4.3e-42 175.3 140 64.3
Nitab4.5_0000783g0290 Nicotiana tabacum HOM05D003235 ORTHO05D003863 4.3e-42 175.3 146 61.6
Sc14g0002390 Simmondsia chinensis HOM05D003235 ORTHO05D003863 4.3e-42 175.3 152 60.5
SGA_v2.0_scaffold98G29294 Striga asiatica HOM05D003235 ORTHO05D003863 4.3e-42 175.3 146 61.6
Sabra09G0111000 Salix brachista HOM05D003235 ORTHO05D003863 5.7e-42 174.9 156 60.3
THA.LOC104807394 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 7.4e-42 174.5 150 60.7
Lsat_1_v5_gn_7_116021 Lactuca sativa HOM05D003235 ORTHO05D003863 9.7e-42 174.1 146 63.7
Sed0009233 Sechium edule HOM05D003235 ORTHO05D003863 9.7e-42 174.1 138 66.7
Glyma.05G131100 Glycine max HOM05D003235 ORTHO05D003863 1.3e-41 173.7 152 62.5
QL11p054430 Quercus lobata HOM05D003235 ORTHO05D003863 1.3e-41 173.7 137 62.8
Sp6g22200 Schrenkiella parvula HOM05D003235 ORTHO05D003863 1.7e-41 173.3 154 61.0
THA.LOC104819684 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 2.2e-41 172.9 151 60.3
Thhalv10013846m.g Eutrema salsugineum HOM05D003235 ORTHO05D003863 2.8e-41 172.6 151 60.9
Peaxi162Scf00362g00250 Petunia axillaris HOM05D003235 ORTHO05D003863 2.8e-41 172.6 146 61.6
QL11p054583 Quercus lobata HOM05D003235 ORTHO05D003863 3.7e-41 172.2 136 62.5
Eucgr.I01507 Eucalyptus grandis HOM05D003235 ORTHO05D003863 4.8e-41 171.8 152 60.5
Glyma.08G085800 Glycine max HOM05D003235 ORTHO05D003863 4.8e-41 171.8 152 61.8
FAN04G0585 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.1e-40 170.6 163 57.1
ECA233G5747 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.8e-40 169.9 146 61.0
ECA236G3279 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.8e-40 169.9 153 57.5
HanXRQChr11g0335221 Helianthus annuus HOM05D003235 ORTHO05D003863 2.4e-40 169.5 146 61.0
Lsat_1_v5_gn_8_120260 Lactuca sativa HOM05D003235 ORTHO05D003863 4.1e-40 168.7 146 61.0
Carub.0008s2130 Capsella rubella HOM05D003235 ORTHO05D003863 6.9e-40 167.9 154 59.7
AL8G37210 Arabidopsis lyrata HOM05D003235 ORTHO05D003863 9.1e-40 167.5 152 59.2
BcaNung00616 Brassica carinata HOM05D003235 ORTHO05D003863 1.2e-39 167.2 154 59.1
CAN.G1804.1 Capsicum annuum HOM05D003235 ORTHO05D003863 1.5e-39 166.8 146 61.0
CARHR274300 Cardamine hirsuta HOM05D003235 ORTHO05D003863 1.5e-39 166.8 154 58.4
BcaNung00615 Brassica carinata HOM05D003235 ORTHO05D003863 2.0e-39 166.4 154 58.4
A01p03310 Brassica napus HOM05D003235 ORTHO05D003863 2.0e-39 166.4 154 58.4
C01p03650 Brassica napus HOM05D003235 ORTHO05D003863 2.0e-39 166.4 154 58.4
BolC1t00356H Brassica oleracea HOM05D003235 ORTHO05D003863 2.0e-39 166.4 154 58.4
BraA01t00316Z Brassica rapa HOM05D003235 ORTHO05D003863 2.0e-39 166.4 154 58.4
Hund00347 Selenicereus undatus HOM05D003235 ORTHO05D003863 2.0e-39 166.4 142 62.0
EL10Ac9g21270 Beta vulgaris HOM05D003235 ORTHO05D003863 2.6e-39 166.0 149 60.4
HanXRQChr14g0458991 Helianthus annuus HOM05D003235 ORTHO05D003863 3.4e-39 165.6 140 60.0
AT5G60620 Arabidopsis thaliana HOM05D003235 ORTHO05D003863 4.5e-39 165.2 154 59.7
Rhsim11G0196500 Rhododendron simsii HOM05D003235 ORTHO05D003863 7.7e-39 164.5 146 58.9
C09p53360 Brassica napus HOM05D003235 ORTHO05D003863 1.3e-38 163.7 154 61.0
Nn1g03654 Nelumbo nucifera HOM05D003235 ORTHO05D003863 2.2e-38 162.9 146 59.6
BcaC04g19724 Brassica carinata HOM05D003235 ORTHO05D003863 6.5e-38 161.4 154 59.7
BolC9t58209H Brassica oleracea HOM05D003235 ORTHO05D003863 6.5e-38 161.4 154 59.7
PSO541G0846 Papaver somniferum HOM05D003235 ORTHO05D003863 6.5e-38 161.4 146 58.2
PSO675G5274 Papaver somniferum HOM05D003235 ORTHO05D003863 6.5e-38 161.4 146 58.2
TPR.G31486 Trifolium pratense HOM05D003235 ORTHO05D003863 6.5e-38 161.4 142 66.2
BcaB08g36361 Brassica carinata HOM05D003235 ORTHO05D003863 1.9e-37 159.8 154 59.7
A10p17830 Brassica napus HOM05D003235 ORTHO05D003863 2.5e-37 159.5 152 57.9
PGR042G2488 Punica granatum HOM05D003235 ORTHO05D003863 7.2e-37 157.9 150 55.3
Aa31LG2G14790 Aethionema arabicum HOM05D003235 ORTHO05D003863 1.2e-36 157.1 153 54.9
TAR627G1023 Trochodendron aralioides HOM05D003235 ORTHO05D003863 2.7e-36 156.0 139 59.7
MBI02_g34309_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 1.5e-34 150.2 147 53.7
Zm00001eb396350 Zea mays HOM05D003235 ORTHO05D003863 7.4e-34 147.9 134 56.0
Zm00001eb323170 Zea mays HOM05D003235 ORTHO05D003863 9.7e-34 147.5 134 55.2
Aqoxy4G02019 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 2.8e-33 146.0 139 56.1
Aqoxy7G01395 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 4.8e-33 145.2 139 54.0
FAN27G1339 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.8e-32 143.3 109 64.2
TPR.G8545 Trifolium pratense HOM05D003235 ORTHO05D003863 1.8e-32 143.3 99 74.7
vmacro17286 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 2.4e-32 142.9 144 54.2
QL10p000641 Quercus lobata HOM05D003235 ORTHO05D003863 7.0e-32 141.4 154 50.0
HPP92_011715 Vanilla planifolia HOM05D003235 ORTHO05D003863 9.1e-32 141.0 134 55.2
Os07g0531600 Oryza sativa ssp. japonica HOM05D003235 ORTHO05D003863 1.0e-30 137.5 134 53.7
HPP92_017619 Vanilla planifolia HOM05D003235 ORTHO05D003863 1.3e-30 137.1 132 53.0
Actinidia26336 Actinidia chinensis HOM05D003235 ORTHO05D003863 3.8e-30 135.6 110 60.0
Atru.chr5.3499 Acer truncatum HOM05D003235 ORTHO05D003863 5.0e-30 135.2 110 62.7
SMO164G0177 Selaginella moellendorffii HOM05D003235 ORTHO05D003863 1.9e-29 133.3 143 50.3
ATR1159G019 Amborella trichopoda HOM05D003235 ORTHO05D003863 5.5e-29 131.7 136 52.9
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 8.0e-28 127.9 110 58.2
Mapoly0113s0056 Marchantia polymorpha HOM05D003235 ORTHO05D003863 2.3e-27 126.3 136 49.3
AagrBONN_evm.TU.Sc2ySwM_344.1475 Anthoceros agrestis HOM05D003235 ORTHO05D003863 1.5e-26 123.6 136 46.3
Eucgr.G01836 Eucalyptus grandis HOM05D003235 ORTHO05D003863 7.4e-26 121.3 148 45.9
Actinidia32018 Actinidia chinensis HOM05D003235 ORTHO05D003863 1.7e-25 120.2 146 50.7
Pp3c11_26030 Physcomitrium patens HOM05D003235 ORTHO05D003863 2.4e-24 116.3 105 54.3
vmacro20582 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 5.3e-24 115.2 100 63.0
Mapoly0005s0123 Marchantia polymorpha HOM05D003235 ORTHO05D003863 2.0e-23 113.2 135 43.0
vmacro02322 Vaccinium macrocarpon HOM05D003235 ORTHO05D017489 2.6e-23 112.8 109 54.1
SalBow5G2197 Salvia bowleyana HOM05D003235 ORTHO05D003863 1.7e-22 110.2 164 45.7
Psat1g147800 Pisum sativum HOM05D003235 ORTHO05D017489 2.2e-22 109.8 60 91.7
EL10Ac3g05050 Beta vulgaris HOM05D003235 ORTHO05D003863 2.9e-22 109.4 104 59.6
Solyc02g055533.1 Solanum lycopersicum HOM05D003235 ORTHO05D003863 1.1e-21 107.5 61 77.0
Hund17321 Selenicereus undatus HOM05D003235 ORTHO05D003863 9.4e-21 104.4 200 39.0
SHI05839 Sapria himalayana HOM05D003235 ORTHO05D003863 1.6e-20 103.6 71 63.4
CBR_g18671 Chara braunii HOM05D003235 ORTHO05D003863 4.0e-19 99.0 143 42.0
Phvul.002G192600 Phaseolus vulgaris HOM05D003235 ORTHO05D017489 8.8e-19 97.8 60 81.7
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 7.5e-18 94.7 62 71.0
CDE05G0254 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.4e-16 90.5 97 53.6
Psat5g172600 Pisum sativum HOM05D002471 ORTHO05D017489 3.1e-16 89.4 54 81.5
SGA_v2.0_scaffold80G25821 Striga asiatica HOM05D003235 ORTHO05D003863 5.9e-15 85.1 54 81.5
SalBow5G2974 Salvia bowleyana HOM05D003235 ORTHO05D003863 7.7e-15 84.7 54 81.5
MSTRG.5468 Avicennia marina HOM05D003235 ORTHO05D017489 6.5e-14 81.6 56 76.8
SHI05840 Sapria himalayana HOM05D003235 ORTHO05D017489 3.6e-12 75.9 51 76.5
HanXRQChr16g0506631 Helianthus annuus HOM05D003235 ORTHO05D003863 1.8e-11 73.6 67 53.7
MCO05G004 Micromonas commoda HOM05D003235 ORTHO05D003863 6.8e-11 71.6 118 36.4
PRCOL_00006733 Prasinoderma coloniale HOM05D003235 ORTHO05D003863 2.6e-10 69.7 127 36.2
AUR62027140 Chenopodium quinoa HOM05D003235 ORTHO05D003863 4.4e-10 68.9 56 66.1
AUR62012940 Chenopodium quinoa HOM05D003235 ORTHO05D003863 2.2e-09 66.6 56 64.3
Phvul.002G192000 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 4.9e-09 65.5 41 78.0
CDE11G0005 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.1e-08 64.3 58 63.8
MBI18_g45952_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D017489 1.4e-08 63.9 54 61.1
vmacro20805 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 1.8e-08 63.5 164 34.8
Cre06.g273250 Chlamydomonas reinhardtii HOM05D003235 ORTHO05D003863 1.6e-07 60.5 96 35.4
FAN08G2058 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.5e-07 59.3 51 64.7
vmacro20801 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 1.7e-06 57.0 42 61.9
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 3.8e-06 55.8 28 92.9


User provided reference genes

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