Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 1.1e-81 306.6 163 100.0
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 6.9e-63 244.2 160 84.4
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 4.7e-59 231.5 171 78.4
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 5.1e-58 228.0 169 76.9
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 2.1e-51 206.1 164 71.3
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 1.3e-48 196.8 166 70.5
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 1.8e-47 193.0 161 68.3
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 9.1e-47 190.7 170 65.9
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 2.2e-45 186.0 164 68.9
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 5.5e-44 181.4 165 67.3
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 6.3e-40 167.9 174 58.0
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 8.3e-40 167.5 167 59.9
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 1.8e-39 166.4 139 66.9
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 2.4e-39 166.0 171 58.5
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 1.2e-38 163.7 155 64.5
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 2.7e-38 162.5 172 58.7
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 2.7e-38 162.5 96 84.4
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 3.5e-38 162.2 101 82.2
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 3.5e-38 162.2 164 58.5
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 5.9e-38 161.4 133 68.4
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 2.2e-37 159.5 130 66.2
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 2.9e-37 159.1 110 74.5
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 2.9e-37 159.1 110 74.5
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 5.0e-37 158.3 132 68.2
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 6.5e-37 157.9 152 59.2
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 6.5e-37 157.9 109 74.3
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 6.5e-37 157.9 159 57.2
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 8.5e-37 157.5 157 58.0
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 1.1e-36 157.1 103 81.6
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 1.1e-36 157.1 123 68.3
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.5e-36 156.8 99 80.8
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 2.5e-36 156.0 105 77.1
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 4.2e-36 155.2 148 58.8
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 5.5e-36 154.8 104 77.9
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 7.2e-36 154.5 105 75.2
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 7.2e-36 154.5 152 59.9
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 7.2e-36 154.5 163 57.1
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 9.4e-36 154.1 166 56.0
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 1.2e-35 153.7 185 54.1
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.6e-35 153.3 90 84.4
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 1.6e-35 153.3 127 65.4
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 1.6e-35 153.3 127 65.4
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 1.6e-35 153.3 127 65.4
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.6e-35 153.3 99 80.8
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 1.6e-35 153.3 164 55.5
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 2.7e-35 152.5 96 82.3
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 3.6e-35 152.1 95 80.0
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 3.6e-35 152.1 95 80.0
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 3.6e-35 152.1 102 78.4
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 6.1e-35 151.4 95 78.9
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 6.1e-35 151.4 96 81.2
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 6.1e-35 151.4 113 71.7
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 8.0e-35 151.0 95 78.9
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 8.0e-35 151.0 95 80.0
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 8.0e-35 151.0 97 78.4
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 1.0e-34 150.6 95 80.0
TPR.G35538 Trifolium pratense HOM05D006461 ORTHO05D008199 1.4e-34 150.2 92 91.3
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 1.8e-34 149.8 95 80.0
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 1.8e-34 149.8 100 78.0
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 2.3e-34 149.4 95 80.0
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 3.0e-34 149.1 161 57.1
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 3.0e-34 149.1 97 77.3
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 4.0e-34 148.7 95 78.9
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 4.0e-34 148.7 95 78.9
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 4.0e-34 148.7 95 78.9
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 4.0e-34 148.7 138 61.6
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 4.0e-34 148.7 95 78.9
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 5.2e-34 148.3 161 57.1
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 5.2e-34 148.3 104 75.0
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 6.8e-34 147.9 97 77.3
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 8.8e-34 147.5 95 77.9
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 8.8e-34 147.5 161 56.5
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 1.2e-33 147.1 104 74.0
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 1.2e-33 147.1 95 75.8
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 2.0e-33 146.4 95 77.9
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 2.6e-33 146.0 98 76.5
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 4.4e-33 145.2 94 76.6
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 5.7e-33 144.8 102 74.5
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 9.8e-33 144.1 118 66.1
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 1.3e-32 143.7 110 69.1
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 1.3e-32 143.7 117 68.4
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 1.7e-32 143.3 105 70.5
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 1.7e-32 143.3 148 60.1
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 2.8e-32 142.5 158 51.3
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 2.8e-32 142.5 136 62.5
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 2.8e-32 142.5 160 57.5
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 3.7e-32 142.1 130 62.3
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 6.3e-32 141.4 133 60.2
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 8.3e-32 141.0 99 71.7
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 1.8e-31 139.8 105 72.4
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 3.1e-31 139.0 144 60.4
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 7.0e-31 137.9 90 75.6
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 9.1e-31 137.5 93 73.1
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 1.6e-30 136.7 79 86.1
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 2.0e-30 136.3 147 55.8
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 2.3e-29 132.9 96 70.8
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 2.9e-29 132.5 158 51.3
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 6.6e-29 131.3 97 69.1
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 1.1e-28 130.6 148 55.4
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 3.3e-28 129.0 86 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 5.5e-28 128.3 92 68.5
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 1.6e-27 126.7 153 50.3
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 2.8e-27 125.9 74 83.8
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 4.7e-27 125.2 77 81.8
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 4.7e-27 125.2 77 80.5
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 8.3e-24 114.4 85 67.1
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 7.0e-23 111.3 88 61.4
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 3.5e-22 109.0 83 63.9
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 2.3e-21 106.3 164 45.1
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 1.2e-17 94.0 83 60.2
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 5.8e-17 91.7 80 48.8
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 1.3e-16 90.5 179 36.9
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 1.3e-16 90.5 179 36.9
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 3.2e-15 85.9 48 89.6
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 7.0e-15 84.7 48 85.4
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 2.7e-14 82.8 104 51.0
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.1e-10 70.9 56 69.6
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 2.3e-10 69.7 49 71.4
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 5.2e-10 68.6 47 68.1
ClCG01G014880 Citrullus lanatus HOM05D002854 ORTHO05D003051 1.6e-06 57.0 77 42.9
CsaV3_1G007440 Cucumis sativus L. HOM05D002854 ORTHO05D003051 1.6e-06 57.0 77 42.9
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 1.6e-06 57.0 44 68.2
MELO3C002161.2 Cucumis melo HOM05D002854 ORTHO05D003051 2.1e-06 56.6 84 39.3
Mapoly0051s0029 Marchantia polymorpha HOM05D002854 ORTHO05D003051 2.7e-06 56.2 74 45.9
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 3.5e-06 55.8 73 50.7
Ciclev10023008m.g Citrus clementina HOM05D002854 ORTHO05D003051 4.6e-06 55.5 68 44.1
Lj9P413T35 Lonicera japonica HOM05D002854 ORTHO05D003051 4.6e-06 55.5 68 42.6
Oeu019053.1 Olea europaea HOM05D002854 ORTHO05D003051 4.6e-06 55.5 64 43.8
Sc16g0010190 Simmondsia chinensis HOM05D002854 ORTHO05D003051 4.6e-06 55.5 78 39.7
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 6.0e-06 55.1 50 60.0
Sed0019664 Sechium edule HOM05D002854 ORTHO05D003051 6.0e-06 55.1 78 41.0
EL10Ac4g09436 Beta vulgaris HOM05D002854 ORTHO05D003051 7.8e-06 54.7 67 43.3
MBI06_g27499_MAGBIO Magnolia biondii HOM05D002854 ORTHO05D003051 7.8e-06 54.7 87 39.1


User provided reference genes

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