Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 1.2e-59 233.0 121 100.0
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 2.9e-58 228.4 121 98.3
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 2.3e-55 218.8 121 93.4
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 3.0e-55 218.4 121 93.4
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 2.6e-54 215.3 121 92.6
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 6.3e-53 210.7 121 90.9
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 7.7e-51 203.8 121 90.1
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 2.2e-50 202.2 121 89.3
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 3.8e-50 201.4 121 86.8
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 1.5e-49 199.5 121 86.0
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 1.5e-49 199.5 117 88.0
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 4.4e-46 188.0 112 86.6
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 1.3e-45 186.4 112 79.5
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 1.7e-45 186.0 113 85.0
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 2.8e-45 185.3 112 78.6
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.8e-45 185.3 117 81.2
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 4.8e-45 184.5 114 87.7
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 3.1e-44 181.8 121 74.4
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 7.0e-44 180.6 121 72.7
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 7.0e-44 180.6 121 73.6
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 4.5e-43 177.9 121 74.4
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 4.5e-43 177.9 104 89.4
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.2e-42 175.6 117 76.9
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 2.9e-42 175.3 121 71.1
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.9e-42 175.3 121 70.2
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 3.8e-42 174.9 121 70.2
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 3.8e-42 174.9 121 72.7
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 1.5e-41 172.9 115 75.7
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 2.5e-41 172.2 117 75.2
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.5e-41 172.2 121 68.6
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 3.2e-41 171.8 104 86.5
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.2e-41 171.4 123 71.5
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 4.2e-41 171.4 113 75.2
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 4.2e-41 171.4 121 71.1
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 5.5e-41 171.0 113 74.3
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 5.5e-41 171.0 112 75.0
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 7.2e-41 170.6 114 74.6
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 9.5e-41 170.2 121 70.2
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 9.5e-41 170.2 121 70.2
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 1.2e-40 169.9 121 71.1
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.2e-40 169.9 121 66.9
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 1.6e-40 169.5 111 74.8
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 2.1e-40 169.1 121 69.4
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 2.1e-40 169.1 121 66.9
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 2.1e-40 169.1 122 69.7
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 2.8e-40 168.7 121 69.4
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 3.6e-40 168.3 113 71.7
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 6.1e-40 167.5 112 75.9
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 6.1e-40 167.5 121 68.6
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 6.1e-40 167.5 113 74.3
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 8.0e-40 167.2 112 70.5
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 8.0e-40 167.2 112 75.0
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 1.0e-39 166.8 114 74.6
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 1.4e-39 166.4 121 68.6
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 1.4e-39 166.4 114 71.1
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 1.8e-39 166.0 121 67.8
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 6.8e-39 164.1 117 70.9
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 8.8e-39 163.7 121 65.3
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 1.2e-38 163.3 101 78.2
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 1.5e-38 162.9 121 66.9
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 2.6e-38 162.2 114 71.1
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 3.4e-38 161.8 99 78.8
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 4.4e-38 161.4 113 70.8
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 5.7e-38 161.0 121 66.1
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 7.5e-38 160.6 112 72.3
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 7.5e-38 160.6 121 68.6
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.7e-37 159.5 114 69.3
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 2.2e-37 159.1 113 69.9
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 1.1e-36 156.8 121 66.1
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 1.1e-36 156.8 113 69.9
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 1.1e-36 156.8 105 68.6
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 1.4e-36 156.4 146 58.2
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 1.4e-36 156.4 114 67.5
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 1.8e-36 156.0 113 69.0
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 1.8e-36 156.0 113 69.9
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 4.1e-36 154.8 113 69.0
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 4.1e-36 154.8 113 69.0
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 4.1e-36 154.8 113 69.0
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 4.1e-36 154.8 113 69.0
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 4.1e-36 154.8 106 71.7
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 4.1e-36 154.8 121 64.5
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 5.4e-36 154.5 113 69.0
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 9.2e-36 153.7 112 70.5
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 9.2e-36 153.7 113 69.0
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 1.2e-35 153.3 113 68.1
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 1.6e-35 152.9 111 66.7
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 2.7e-35 152.1 111 65.8
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 3.5e-35 151.8 100 74.0
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 4.5e-35 151.4 114 69.3
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 4.5e-35 151.4 104 72.1
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 5.9e-35 151.0 114 64.9
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 7.8e-35 150.6 106 68.9
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 7.8e-35 150.6 121 66.1
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 1.0e-34 150.2 104 72.1
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 1.7e-34 149.4 112 66.1
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 2.3e-34 149.1 108 70.4
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.9e-34 148.7 100 74.0
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.9e-33 146.0 89 77.5
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 1.9e-33 146.0 103 68.9
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 1.9e-33 146.0 96 74.0
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 3.3e-33 145.2 89 78.7
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 7.3e-33 144.1 106 67.9
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 7.3e-33 144.1 104 69.2
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 1.2e-32 143.3 104 69.2
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.2e-32 143.3 104 67.3
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 4.7e-32 141.4 97 73.2
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 6.1e-32 141.0 100 73.0
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 6.1e-32 141.0 103 64.1
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 8.0e-32 140.6 108 64.8
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 1.8e-31 139.4 104 67.3
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 4.0e-31 138.3 97 71.1
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 5.2e-31 137.9 97 70.1
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 8.9e-31 137.1 99 69.7
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 1.2e-30 136.7 109 64.2
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 1.2e-30 136.7 86 75.6
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 2.0e-30 136.0 95 73.7
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 2.6e-30 135.6 110 64.5
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 4.4e-30 134.8 124 55.6
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.4e-30 134.8 95 69.5
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 4.1e-28 128.3 126 56.3
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 2.0e-27 125.9 109 59.6
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 2.0e-27 125.9 104 57.7
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 3.5e-27 125.2 102 65.7
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 7.8e-27 124.0 99 59.6
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 2.3e-26 122.5 98 61.2
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.0e-23 113.6 75 76.0
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 2.3e-23 112.5 93 61.3
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 2.3e-23 112.5 105 65.7
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 3.4e-22 108.6 111 48.6
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 2.2e-21 105.9 109 50.5
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 3.5e-19 98.6 70 65.7
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 3.9e-18 95.1 62 79.0
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.1e-17 93.6 79 57.0
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 2.3e-15 85.9 81 61.7
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 5.2e-15 84.7 66 63.6
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 3.7e-13 78.6 109 39.4
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 3.9e-10 68.6 52 57.7
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 2.5e-09 65.9 108 34.3
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 6.2e-08 61.2 99 33.3


User provided reference genes

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