Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 1.8e-45 185.7 99 100.0
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 7.3e-31 137.1 78 96.2
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.8e-21 105.9 80 72.5
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 5.2e-21 104.4 80 66.2
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.2e-20 103.2 81 70.4
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 2.0e-17 92.4 78 65.4
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 2.7e-17 92.0 80 65.0
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.3e-16 89.7 80 62.5
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 3.9e-16 88.2 73 64.4
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.9e-15 85.9 92 47.8
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 4.3e-15 84.7 80 58.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 4.3e-15 84.7 71 60.6
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.6e-15 84.3 80 58.8
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 7.3e-15 84.0 72 58.3
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.2e-14 83.2 80 55.0
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.2e-14 83.2 97 46.4
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.1e-14 82.4 80 55.0
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.1e-14 82.4 80 55.0
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.8e-14 82.0 61 67.2
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.6e-14 81.6 71 56.3
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 4.7e-14 81.3 87 48.3
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 4.7e-14 81.3 85 50.6
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 8.1e-14 80.5 95 46.3
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.1e-14 80.5 71 56.3
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 8.1e-14 80.5 76 59.2
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.4e-13 79.7 80 53.8
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 1.4e-13 79.7 81 58.0
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.0e-13 78.2 67 56.7
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.0e-13 78.2 81 49.4
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.2e-13 77.8 76 53.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.2e-13 77.8 76 53.9
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.2e-13 77.8 84 47.6
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.2e-13 77.8 76 57.9
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 6.8e-13 77.4 85 48.2
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.2e-12 76.6 80 51.2
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.5e-12 76.3 74 56.8
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.5e-12 76.3 84 45.2
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.5e-12 76.3 97 42.3
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 2.0e-12 75.9 85 50.6
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.0e-12 75.9 76 52.6
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 3.4e-12 75.1 80 47.5
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 3.4e-12 75.1 75 49.3
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 4.4e-12 74.7 49 65.3
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 4.4e-12 74.7 71 56.3
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 5.8e-12 74.3 49 63.3
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 5.8e-12 74.3 78 51.3
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 5.8e-12 74.3 80 47.5
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 5.8e-12 74.3 75 49.3
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 7.5e-12 73.9 74 48.6
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 7.5e-12 73.9 72 51.4
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 7.5e-12 73.9 72 51.4
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 9.9e-12 73.6 71 49.3
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 9.9e-12 73.6 76 47.4
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.3e-11 73.2 49 71.4
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.7e-11 72.8 74 50.0
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.7e-11 72.8 74 50.0
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 2.9e-11 72.0 71 49.3
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.9e-11 72.0 81 49.4
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.9e-11 72.0 74 52.7
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.7e-11 71.6 71 49.3
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 3.7e-11 71.6 80 50.0
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 4.9e-11 71.2 49 63.3
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 4.9e-11 71.2 81 44.4
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.9e-11 71.2 72 51.4
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 6.4e-11 70.9 79 44.3
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.1e-10 70.1 49 61.2
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.4e-10 69.7 83 48.2
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.4e-10 69.7 74 51.4
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.4e-10 69.7 76 48.7
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.4e-10 69.7 82 50.0
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.9e-10 69.3 48 68.8
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.9e-10 69.3 80 46.2
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.9e-10 69.3 83 43.4
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.4e-10 68.9 49 63.3
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 2.4e-10 68.9 79 46.8
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 3.2e-10 68.6 47 63.8
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 4.1e-10 68.2 72 50.0
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 5.4e-10 67.8 49 63.3
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 5.4e-10 67.8 49 63.3
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 5.4e-10 67.8 49 61.2
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 7.1e-10 67.4 74 54.1
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 7.1e-10 67.4 69 52.2
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 7.1e-10 67.4 80 47.5
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 9.2e-10 67.0 72 51.4
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.2e-09 66.6 71 45.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.2e-09 66.6 49 59.2
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.6e-09 66.2 105 39.0
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.6e-09 66.2 49 61.2
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.6e-09 66.2 48 64.6
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.6e-09 66.2 46 60.9
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.6e-09 66.2 46 60.9
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.7e-09 65.5 80 48.8
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.7e-09 65.5 84 46.4
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.7e-09 65.5 41 65.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.7e-09 65.5 76 44.7
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.5e-09 65.1 46 65.2
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 3.5e-09 65.1 46 65.2
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.5e-09 65.1 49 59.2
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 6.0e-09 64.3 49 59.2
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 6.0e-09 64.3 49 59.2
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 6.0e-09 64.3 67 53.7
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 7.8e-09 63.9 71 43.7
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.0e-08 63.5 78 48.7
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.3e-08 63.2 46 63.0
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.3e-08 63.2 84 45.2
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.7e-08 62.8 72 44.4
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.7e-08 62.8 49 57.1
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.7e-08 62.8 72 44.4
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 3.9e-08 61.6 89 41.6
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 5.1e-08 61.2 80 43.8
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 5.1e-08 61.2 89 41.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 5.1e-08 61.2 80 43.8
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 6.6e-08 60.8 49 55.1
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.5e-07 59.7 49 53.1
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-07 59.7 49 53.1
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.5e-07 59.7 49 53.1
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-07 59.7 49 53.1
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 3.3e-07 58.5 49 53.1
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 4.3e-07 58.2 49 55.1
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 5.6e-07 57.8 34 67.6
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 7.3e-07 57.4 49 51.0
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.7e-06 54.7 76 39.5
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 6.2e-06 54.3 75 41.3


User provided reference genes

Program Settings