Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.9e-125 451.8 219 100.0
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 6.8e-106 387.5 224 85.3
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 7.5e-105 384.0 224 84.4
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 7.1e-103 377.5 225 83.6
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-98 363.2 228 81.1
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 5.2e-98 361.3 224 81.7
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 6.8e-98 360.9 224 81.2
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 3.4e-97 358.6 225 80.4
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.4e-95 353.2 224 79.5
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 3.0e-85 318.9 216 74.5
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 3.9e-85 318.5 230 68.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.9e-84 316.2 231 67.1
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.5e-84 315.8 230 68.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 3.3e-84 315.5 223 71.3
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.1e-83 312.8 228 67.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 4.0e-82 308.5 229 68.1
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 9.0e-82 307.4 230 69.6
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.2e-81 307.0 226 70.8
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-81 305.8 230 66.5
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 4.5e-81 305.1 225 70.7
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.8e-81 304.7 226 69.5
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.6e-81 304.3 230 66.1
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 7.6e-81 304.3 230 66.1
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 7.6e-81 304.3 233 68.2
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.3e-80 303.5 230 68.3
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.3e-80 303.5 226 68.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.1e-79 300.4 224 69.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.4e-79 300.1 230 67.0
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.9e-79 299.7 224 69.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.2e-79 298.9 224 68.8
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 4.2e-79 298.5 230 67.8
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.4e-79 298.1 224 68.8
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 5.4e-79 298.1 231 68.0
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.2e-78 297.0 224 69.2
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.6e-78 296.6 228 67.5
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.1e-78 296.2 224 68.3
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.5e-78 295.4 230 66.1
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 6.0e-78 294.7 230 67.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.3e-77 293.5 226 65.9
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.7e-77 293.1 225 68.9
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 2.3e-77 292.7 221 69.2
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 3.0e-77 292.4 226 64.2
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.9e-76 289.7 232 64.7
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.9e-76 289.7 221 68.3
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 4.3e-76 288.5 233 66.1
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 9.6e-76 287.3 221 67.9
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 3.1e-74 282.3 231 64.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.3e-74 281.6 224 65.6
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.3e-74 281.6 224 65.6
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 6.9e-74 281.2 239 63.2
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.9e-74 281.2 221 67.0
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.9e-74 281.2 221 67.0
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.5e-73 280.0 224 65.6
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.0e-73 279.6 224 62.9
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.6e-73 279.3 213 63.4
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 8.4e-72 274.2 223 62.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.9e-71 273.1 224 60.7
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.2e-71 272.3 217 65.4
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 4.2e-71 271.9 229 61.6
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.5e-71 271.6 223 62.8
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 5.5e-71 271.6 225 64.9
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.2e-70 270.4 223 60.1
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.6e-70 270.0 231 61.9
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.5e-70 268.9 223 62.3
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 6.0e-70 268.1 236 61.0
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.8e-69 266.5 234 60.7
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.4e-68 261.2 226 60.2
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 9.6e-68 260.8 226 63.3
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.6e-68 260.8 234 58.5
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.3e-67 260.4 229 59.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.1e-67 259.6 216 63.0
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.8e-67 259.2 224 58.9
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.4e-66 256.9 222 60.8
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.4e-66 256.1 218 61.9
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 6.9e-66 254.6 231 59.3
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 9.0e-66 254.2 219 61.6
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.0e-65 253.1 229 61.6
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.0e-65 253.1 223 61.0
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.4e-65 252.3 226 61.5
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.0e-64 250.8 229 59.8
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.3e-64 250.4 226 59.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.3e-64 250.4 223 59.6
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.7e-64 250.0 223 60.5
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.7e-64 250.0 228 57.9
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.2e-64 249.6 218 61.0
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.2e-64 249.6 229 59.8
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 2.9e-64 249.2 214 58.9
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 4.9e-64 248.4 225 58.7
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 6.5e-64 248.1 223 57.0
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.1e-63 247.3 226 58.0
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.4e-63 246.9 216 58.3
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.4e-63 246.9 226 57.5
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.9e-63 246.5 225 57.3
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.9e-63 246.5 225 57.3
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.2e-63 245.7 218 60.1
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.2e-63 245.7 228 58.3
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 4.2e-63 245.4 217 59.4
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.5e-63 245.0 228 57.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 9.3e-63 244.2 225 56.9
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.2e-62 243.8 223 57.4
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.6e-62 243.4 221 56.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.6e-62 243.4 226 55.8
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 6.0e-62 241.5 210 57.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 6.0e-62 241.5 220 58.6
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.0e-61 240.7 221 57.5
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.0e-61 240.7 223 57.0
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.0e-61 240.7 169 69.8
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.3e-61 240.4 220 58.6
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.8e-61 240.0 220 57.7
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 3.9e-61 238.8 221 57.0
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 8.7e-61 237.7 146 74.7
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.1e-60 237.3 230 54.8
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-60 236.9 168 67.9
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.3e-60 235.7 219 53.9
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.6e-59 233.4 193 62.2
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 2.8e-59 232.6 215 55.8
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.7e-59 232.3 245 51.8
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 4.8e-59 231.9 215 56.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.1e-58 230.7 201 57.7
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.4e-58 230.3 232 54.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.4e-58 229.6 209 58.4
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 6.9e-58 228.0 247 53.0
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.5e-57 226.9 231 55.4
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 4.5e-57 225.3 243 51.4
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 4.5e-57 225.3 232 52.6
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 7.6e-57 224.6 176 63.6
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.7e-56 223.4 151 69.5
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.2e-56 223.0 228 55.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 5.0e-56 221.9 215 55.3
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 5.0e-56 221.9 229 51.1
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.9e-55 219.9 220 56.8
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 7.2e-55 218.0 189 62.4
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 4.6e-54 215.3 223 52.9
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.8e-53 213.4 159 64.2
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.3e-53 213.0 222 53.2
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.5e-52 210.3 200 51.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 5.7e-52 208.4 139 68.3
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 7.4e-52 208.0 220 55.0
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.7e-52 207.6 228 49.6
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 9.7e-52 207.6 203 51.7
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.3e-51 207.2 195 56.4
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.2e-51 206.5 206 51.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.8e-51 205.3 214 50.5
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.0e-49 199.9 222 47.7
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.6e-49 199.5 228 47.8
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.4e-49 199.1 222 47.7
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 4.5e-49 198.7 225 48.0
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.7e-48 196.8 158 60.1
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.2e-48 196.4 138 63.8
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.9e-48 196.1 223 46.2
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.9e-48 196.1 222 45.9
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 5.0e-48 195.3 210 52.9
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.2e-47 192.6 223 47.5
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.2e-47 191.4 210 47.1
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.2e-46 190.7 212 50.9
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.1e-46 189.9 130 63.1
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.1e-46 188.3 263 43.7
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.0e-45 187.6 226 47.3
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.9e-45 185.7 128 65.6
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 7.4e-44 181.4 202 48.5
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 5.3e-42 175.3 219 46.6
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.2e-41 174.1 122 65.6
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 3.4e-41 172.6 129 63.6
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.5e-41 172.2 128 60.2
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.7e-40 170.2 171 51.5
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.5e-39 166.4 129 59.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.0e-36 156.8 129 54.3
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 4.4e-36 155.6 161 54.7
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 3.7e-35 152.5 106 62.3
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 4.8e-35 152.1 214 44.9
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.3e-35 151.8 82 85.4
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-32 143.7 228 42.5
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.7e-32 143.7 228 42.5
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.5e-31 139.8 225 40.9
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.7e-30 135.6 88 72.7
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 3.2e-23 112.8 63 81.0
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 7.5e-20 101.7 112 50.0
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 6.3e-19 98.6 54 79.6
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.5e-17 92.4 58 72.4


User provided reference genes

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