Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 6.4e-235 817.0 403 100.0
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.6e-214 749.2 403 91.8
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.1e-205 719.9 403 88.3
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.8e-197 692.6 403 85.6
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.8e-192 676.0 398 84.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 5.9e-188 661.0 405 82.2
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.6e-185 652.9 404 80.7
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.0e-184 650.2 400 81.5
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 5.3e-181 637.9 407 80.8
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 5.9e-180 634.4 400 79.5
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.0e-179 633.6 404 79.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 4.7e-177 624.8 407 78.6
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.4e-173 612.5 404 74.3
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.1e-173 612.1 400 77.2
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-172 609.0 341 86.8
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 4.5e-172 608.2 400 76.5
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 5.5e-170 601.3 395 75.7
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.4e-168 596.7 399 73.9
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 2.3e-168 595.9 397 74.3
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.0e-168 595.1 405 72.8
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 5.2e-168 594.7 408 71.8
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 5.2e-168 594.7 408 71.8
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 5.2e-168 594.7 400 74.0
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 5.2e-168 594.7 397 74.6
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 2.6e-167 592.4 395 74.7
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 7.5e-167 590.9 397 74.3
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 7.5e-167 590.9 347 81.0
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 9.8e-167 590.5 397 74.3
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 2.8e-166 589.0 361 78.7
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 3.7e-166 588.6 405 72.8
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.7e-166 588.6 401 73.3
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 3.7e-166 588.6 353 81.0
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.1e-165 587.0 443 67.7
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.4e-165 586.6 405 71.1
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 3.1e-165 585.5 405 70.9
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 7.0e-165 584.3 403 72.7
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 7.0e-165 584.3 404 72.3
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.2e-164 583.6 403 70.2
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.6e-164 583.2 408 71.8
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.7e-164 582.4 402 72.1
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 2.7e-164 582.4 404 72.0
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.9e-163 578.9 358 76.8
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 5.0e-163 578.2 403 71.2
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 8.5e-163 577.4 399 71.7
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 1.1e-162 577.0 340 80.3
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 1.5e-162 576.6 402 69.7
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.9e-162 576.2 424 69.6
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 1.9e-162 576.2 414 70.5
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 2.5e-162 575.9 402 70.9
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 3.2e-162 575.5 402 71.4
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 3.2e-162 575.5 403 69.5
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 7.2e-162 574.3 406 70.2
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.2e-161 573.5 400 70.8
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 3.6e-161 572.0 422 67.5
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 6.1e-161 571.2 400 70.0
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.4e-160 570.1 402 69.4
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.4e-160 570.1 369 75.6
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.4e-160 570.1 403 69.0
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.8e-160 569.7 347 77.5
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.3e-160 569.3 407 69.8
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 5.2e-160 568.2 402 69.2
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 6.8e-160 567.8 336 79.8
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.4e-159 565.1 405 71.1
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 5.7e-159 564.7 367 72.8
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 5.7e-159 564.7 354 76.3
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 9.8e-159 563.9 400 69.5
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-158 563.5 347 76.4
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 2.2e-158 562.8 399 68.9
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 2.8e-158 562.4 393 71.2
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.8e-158 562.4 409 68.9
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 3.7e-158 562.0 404 70.8
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 8.3e-158 560.8 424 66.5
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 1.4e-157 560.1 340 77.9
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.4e-157 560.1 398 70.4
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.4e-157 560.1 333 79.9
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 5.4e-157 558.1 400 72.0
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 7.0e-157 557.8 429 64.6
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 3.5e-156 555.4 391 71.6
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 5.0e-155 551.6 346 77.2
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.9e-154 549.7 333 76.3
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 4.3e-154 548.5 406 69.0
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 5.6e-154 548.1 335 77.3
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 6.1e-153 544.7 400 67.2
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 8.0e-153 544.3 386 69.7
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.4e-152 543.5 368 72.3
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.8e-152 543.1 327 78.3
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.8e-152 543.1 403 66.5
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 6.8e-152 541.2 404 66.6
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 8.9e-152 540.8 400 66.2
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.0e-151 539.7 351 72.9
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.6e-151 539.3 330 77.0
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 5.7e-151 538.1 403 66.0
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 7.5e-151 537.7 349 73.1
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.7e-150 536.6 377 68.4
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 2.9e-150 535.8 340 75.3
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 2.9e-150 535.8 355 72.4
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 3.7e-150 535.4 298 85.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 6.4e-150 534.6 405 65.9
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 1.1e-149 533.9 402 66.7
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.8e-149 533.1 350 72.9
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.4e-149 532.7 339 74.0
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 5.4e-149 531.6 371 71.7
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 5.4e-149 531.6 371 71.7
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 2.0e-148 529.6 325 77.5
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.7e-148 529.3 352 72.4
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-147 527.3 416 65.9
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 2.3e-147 526.2 371 71.2
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.1e-146 523.9 395 66.1
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.5e-143 513.5 350 71.1
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.5e-143 513.5 395 64.8
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-142 509.2 279 86.4
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 4.9e-142 508.4 283 84.1
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 8.3e-142 507.7 338 72.8
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 9.2e-141 504.2 350 70.6
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.5e-138 496.9 333 69.4
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.8e-136 490.0 375 65.1
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 4.0e-136 488.8 382 61.8
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-135 487.3 297 76.1
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 3.7e-134 482.3 310 73.5
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 3.7e-134 482.3 310 73.5
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.4e-133 480.3 328 68.0
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 2.3e-131 473.0 374 62.0
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 5.6e-130 468.4 350 66.9
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 2.9e-126 456.1 333 64.0
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.3e-123 447.2 434 57.8
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.7e-123 446.8 291 73.9
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 6.9e-120 434.9 336 64.3
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 9.9e-119 431.0 346 62.7
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.5e-111 407.1 326 58.3
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.8e-107 393.7 263 73.0
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.1e-106 391.0 321 58.9
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.1e-104 384.4 327 63.9
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.7e-100 369.8 331 56.5
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.3e-99 366.7 295 59.3
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-91 340.5 329 58.1
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 4.6e-84 315.8 188 78.7
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.5e-82 310.1 192 78.6
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.8e-80 303.9 261 62.8
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.4e-74 282.7 157 85.4
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.7e-73 280.8 163 82.2
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 2.2e-70 270.4 275 53.8
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 3.5e-63 246.5 143 76.9
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.3e-59 233.8 235 56.6
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.2e-59 232.6 266 51.9
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 3.7e-57 226.5 298 45.0
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-54 218.4 330 43.3
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.1e-53 214.9 116 89.7
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-50 203.8 132 77.3
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-48 195.7 144 69.4
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 9.5e-45 185.3 144 68.1
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 9.5e-45 185.3 144 68.1
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 8.9e-43 178.7 122 76.2
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.2e-32 142.1 159 53.5
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 9.2e-32 142.1 159 53.5
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 1.0e-30 138.7 232 39.2
Psat0s4321g0080 Pisum sativum HOM05D003122 ORTHO05D012218 3.9e-30 136.7 100 73.0
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 9.5e-21 105.5 172 37.2
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 8.3e-17 92.4 53 73.6
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 8.3e-17 92.4 53 73.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-13 82.0 51 78.4
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 9.9e-10 68.9 44 77.3
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 9.9e-10 68.9 39 84.6
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 1.3e-09 68.6 56 64.3
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 1.3e-09 68.6 56 64.3
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 5.4e-08 63.2 47 61.7


User provided reference genes

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