Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 1.4e-136 489.6 233 100.0
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 4.8e-49 198.7 106 86.8
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 1.3e-46 190.7 106 81.1
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 4.2e-45 185.7 106 79.2
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 4.6e-44 182.2 105 79.0
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 2.8e-41 172.9 105 71.4
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 9.0e-40 167.9 104 70.2
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 1.2e-39 167.5 100 73.0
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 2.0e-39 166.8 99 74.7
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 2.0e-39 166.8 104 70.2
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 3.4e-39 166.0 106 69.8
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.0e-38 164.5 105 69.5
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.3e-38 164.1 106 69.8
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 3.8e-38 162.5 106 67.0
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 5.0e-38 162.2 106 68.9
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 9.3e-37 157.9 112 67.0
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 2.7e-36 156.4 112 65.2
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 7.9e-36 154.8 106 66.0
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.3e-35 153.3 106 66.0
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 6.7e-35 151.8 106 67.0
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.5e-34 150.6 105 65.7
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.5e-34 149.8 105 64.8
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.5e-34 149.8 105 64.8
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 3.3e-34 149.4 105 65.7
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.3e-34 149.4 105 65.7
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.3e-34 149.4 105 65.7
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 3.3e-34 149.4 106 64.2
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 5.7e-34 148.7 106 64.2
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 7.4e-34 148.3 99 68.7
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.4e-34 148.3 105 62.9
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 9.7e-34 147.9 105 64.8
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 9.7e-34 147.9 137 51.8
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 9.7e-34 147.9 137 51.8
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 9.7e-34 147.9 104 65.4
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 1.3e-33 147.5 106 63.2
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 2.2e-33 146.7 106 64.2
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 2.2e-33 146.7 106 62.3
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 2.8e-33 146.4 106 63.2
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 3.7e-33 146.0 106 61.3
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 3.7e-33 146.0 105 61.9
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 6.3e-33 145.2 104 64.4
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 8.2e-33 144.8 106 64.2
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.4e-32 144.1 106 62.3
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 1.4e-32 144.1 105 64.8
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.8e-32 143.7 112 59.8
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 3.1e-32 142.9 105 60.0
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 9.1e-32 141.4 105 61.9
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 1.5e-31 140.6 106 61.3
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 2.6e-31 139.8 108 60.2
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 2.6e-31 139.8 106 59.4
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 3.4e-31 139.4 107 58.9
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 3.4e-31 139.4 106 60.4
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 3.4e-31 139.4 105 62.9
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 4.5e-31 139.0 107 60.7
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 5.9e-31 138.7 106 59.4
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 5.9e-31 138.7 113 59.3
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 7.7e-31 138.3 113 56.6
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 7.7e-31 138.3 105 61.0
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.3e-30 137.5 107 59.8
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 1.3e-30 137.5 106 60.4
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.3e-30 137.5 105 59.0
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 1.3e-30 137.5 112 58.0
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 2.9e-30 136.3 106 59.4
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 3.8e-30 136.0 100 62.0
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 3.8e-30 136.0 108 58.3
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.1e-29 134.4 104 59.6
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 1.4e-29 134.0 129 51.9
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 1.9e-29 133.7 106 57.5
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.9e-29 133.7 112 55.4
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.9e-29 133.7 112 55.4
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 2.5e-29 133.3 107 59.8
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 3.2e-29 132.9 106 57.5
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 3.2e-29 132.9 106 53.8
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 4.2e-29 132.5 106 56.6
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 5.5e-29 132.1 106 56.6
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 7.2e-29 131.7 106 57.5
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 9.4e-29 131.3 108 55.6
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.2e-28 131.0 106 54.7
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 1.2e-28 131.0 106 56.6
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 1.2e-28 131.0 106 56.6
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 1.6e-28 130.6 112 52.7
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 2.1e-28 130.2 106 54.7
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 2.7e-28 129.8 106 56.6
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 2.7e-28 129.8 112 55.4
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 2.7e-28 129.8 108 54.6
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 3.6e-28 129.4 105 58.1
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 3.6e-28 129.4 108 55.6
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 4.7e-28 129.0 106 52.8
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 6.1e-28 128.6 105 56.2
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 7.9e-28 128.3 106 54.7
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 7.9e-28 128.3 98 59.2
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 2.3e-27 126.7 106 53.8
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 3.9e-27 125.9 106 54.7
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 5.1e-27 125.6 97 58.8
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 1.5e-26 124.0 123 48.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.8e-25 119.8 91 58.2
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.8e-25 119.8 91 58.2
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 2.8e-25 119.8 91 58.2
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 4.8e-25 119.0 97 55.7
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.1e-24 116.3 91 57.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.1e-24 116.3 91 57.1
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 1.0e-22 111.3 106 50.0
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 1.4e-21 107.5 80 60.0
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 3.2e-21 106.3 106 50.0
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 3.6e-20 102.8 74 64.9
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 4.7e-20 102.4 105 49.5
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 4.7e-20 102.4 106 49.1
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 1.7e-17 94.0 110 44.5
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.2e-17 93.6 88 45.5
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.8e-16 90.5 100 42.0
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 5.3e-16 89.0 101 43.6
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 9.1e-16 88.2 67 61.2
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.0e-15 87.0 88 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 1.3e-14 84.3 78 51.3
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 6.5e-14 82.0 94 45.7
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 4.2e-13 79.3 81 48.1
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.6e-12 77.4 100 46.0
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 6.1e-12 75.5 55 60.0
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.0e-11 74.7 50 62.0
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 1.0e-11 74.7 52 57.7
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 1.8e-11 73.9 83 39.8
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 3.3e-10 69.7 50 60.0
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 4.4e-10 69.3 88 37.5
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 7.5e-10 68.6 59 54.2
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.3e-09 67.8 59 54.2
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.7e-09 67.4 76 40.8
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 2.2e-09 67.0 86 40.7
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 2.8e-09 66.6 76 40.8
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 3.7e-09 66.2 58 51.7
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.1e-08 64.7 93 37.6
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 1.8e-08 63.9 71 45.1
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.6e-07 60.8 49 53.1
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 3.5e-07 59.7 68 48.5
Ca_01420_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 1.7e-06 57.4 34 76.5
Medtr2g094090 Medicago truncatula HOM05D000055 ORTHO05D003892 1.7e-06 57.4 34 76.5
Psat5g277920 Pisum sativum HOM05D000055 ORTHO05D003892 1.7e-06 57.4 34 76.5
TPR.G11565 Trifolium pratense HOM05D000055 ORTHO05D003892 1.7e-06 57.4 34 76.5
TPR.G27044 Trifolium pratense HOM05D000055 ORTHO05D003892 1.7e-06 57.4 34 76.5
Lj3g0023786 Lotus japonicus HOM05D000055 ORTHO05D003892 2.2e-06 57.0 34 76.5
Psat7g224720 Pisum sativum HOM05D000055 ORTHO05D003892 2.2e-06 57.0 34 73.5
TWI79G0113 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 2.2e-06 57.0 34 73.5
TWI31G1287 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 3.8e-06 56.2 34 73.5
TAR623G1161 Trochodendron aralioides HOM05D000055 ORTHO05D003892 3.8e-06 56.2 34 76.5
ECA233G4401 Erigeron canadensis HOM05D000055 ORTHO05D003892 5.0e-06 55.8 34 73.5
HanXRQChr01g0018391 Helianthus annuus HOM05D000055 ORTHO05D003892 5.0e-06 55.8 34 73.5
HanXRQChr02g0055721 Helianthus annuus HOM05D000055 ORTHO05D003892 5.0e-06 55.8 34 73.5
Lsat_1_v5_gn_1_65461 Lactuca sativa HOM05D000055 ORTHO05D003892 5.0e-06 55.8 34 73.5
Lsat_1_v5_gn_6_46181 Lactuca sativa HOM05D000055 ORTHO05D003892 5.0e-06 55.8 34 73.5
TPR.G15553 Trifolium pratense HOM05D000055 ORTHO05D003892 5.0e-06 55.8 34 73.5
GSVIVG01025173001 Vitis vinifera HOM05D000055 ORTHO05D003892 5.0e-06 55.8 34 73.5
Ca_05252_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 6.5e-06 55.5 36 69.4
Glyma.12G173600 Glycine max HOM05D000055 ORTHO05D003892 6.5e-06 55.5 34 73.5
Phvul.011G078300 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 6.5e-06 55.5 34 73.5


User provided reference genes

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