Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 4.3e-167 591.3 300 100.0
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 4.0e-149 531.6 301 90.4
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 5.8e-148 527.7 301 91.0
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 9.2e-146 520.4 301 89.0
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 2.8e-134 482.3 301 82.1
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 7.6e-132 474.2 298 80.9
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 3.8e-131 471.9 298 80.5
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 4.8e-126 454.9 299 78.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 8.7e-120 434.1 269 82.5
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.5e-119 433.3 299 75.3
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.4e-117 426.8 269 81.4
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.6e-105 386.7 301 66.8
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 5.1e-104 381.7 301 65.4
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.9e-103 379.8 301 67.8
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 4.3e-103 378.6 330 63.6
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 9.7e-103 377.5 307 65.5
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 1.6e-102 376.7 304 65.1
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 2.2e-102 376.3 300 66.3
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 4.8e-102 375.2 306 65.4
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.4e-101 373.6 298 66.8
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 3.1e-101 372.5 300 66.7
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.1e-101 372.5 301 66.4
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.1e-101 372.5 301 66.4
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 1.5e-100 370.2 330 62.1
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 2.2e-99 366.3 334 61.1
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.2e-98 362.1 324 61.4
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 9.4e-98 360.9 335 60.9
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 2.1e-97 359.8 290 64.5
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.6e-97 359.0 224 81.2
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 4.6e-97 358.6 304 65.1
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.6e-97 358.6 224 80.8
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.1e-97 358.2 224 80.8
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 7.9e-97 357.8 325 61.2
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.8e-96 356.7 228 78.9
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.1e-95 354.0 227 77.5
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.5e-95 353.6 321 60.4
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.5e-95 352.8 321 59.8
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.5e-95 352.8 224 79.0
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.3e-95 352.4 304 62.8
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.3e-95 352.1 224 79.0
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 7.4e-95 351.3 237 75.1
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 9.7e-95 350.9 226 76.5
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.3e-94 350.5 337 58.8
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 3.7e-94 349.0 309 60.2
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 6.3e-94 348.2 211 82.0
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.1e-93 347.4 331 58.9
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.4e-93 347.1 224 76.8
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 2.4e-93 346.3 270 66.3
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 9.1e-93 344.4 221 76.9
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 9.1e-93 344.4 224 77.7
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.2e-92 344.0 226 76.1
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.2e-92 344.0 235 72.3
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 2.0e-92 343.2 224 77.2
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 2.0e-92 343.2 241 71.8
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 2.0e-92 343.2 224 75.4
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 3.4e-92 342.4 225 77.8
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.0e-91 340.9 224 75.9
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 2.2e-91 339.7 227 75.3
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 3.8e-91 339.0 225 75.1
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 3.8e-91 339.0 225 75.1
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 3.8e-91 339.0 225 76.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 5.0e-91 338.6 225 77.3
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 6.5e-91 338.2 225 75.1
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 6.5e-91 338.2 234 73.9
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 8.5e-91 337.8 267 65.9
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 1.1e-90 337.4 323 57.9
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.1e-90 337.4 224 75.4
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.4e-90 337.0 221 75.6
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-90 336.7 227 75.3
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.9e-90 336.7 227 75.3
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 3.2e-90 335.9 219 77.2
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 4.2e-90 335.5 317 60.9
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.2e-90 335.5 221 74.7
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.2e-90 335.5 224 76.8
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 7.2e-90 334.7 224 75.4
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 7.2e-90 334.7 236 71.2
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 9.4e-90 334.3 218 78.4
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 9.4e-90 334.3 218 77.5
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.2e-89 334.0 242 70.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.6e-89 333.6 225 75.1
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.6e-89 333.6 224 73.2
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.1e-89 333.2 221 75.6
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 2.7e-89 332.8 226 76.5
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 2.7e-89 332.8 250 70.8
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 3.6e-89 332.4 224 74.1
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 4.7e-89 332.0 223 76.2
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 6.1e-89 331.6 264 66.7
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 7.9e-89 331.3 226 76.1
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.4e-88 330.5 221 73.3
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.4e-88 330.5 226 76.1
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.8e-88 330.1 226 74.3
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.8e-88 330.1 261 65.9
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.8e-88 330.1 333 56.2
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.3e-88 329.7 230 72.2
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 3.9e-88 328.9 228 72.8
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 5.1e-88 328.6 230 71.7
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 2.6e-87 326.2 224 72.8
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.4e-87 325.5 220 74.5
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 4.4e-87 325.5 210 77.1
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 4.4e-87 325.5 234 70.9
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 7.4e-87 324.7 260 66.2
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 7.4e-87 324.7 232 71.6
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.7e-87 324.3 220 74.5
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 3.7e-86 322.4 217 76.5
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 4.8e-86 322.0 220 74.1
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.4e-85 319.7 225 71.6
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 5.3e-85 318.5 225 71.1
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 3.5e-84 315.8 232 68.5
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 4.5e-84 315.5 217 75.1
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.7e-83 313.5 222 73.0
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.7e-83 313.5 222 69.8
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.2e-83 313.2 215 73.5
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.9e-83 312.8 222 69.8
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 3.2e-82 309.3 177 87.0
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.2e-81 307.4 240 65.4
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.6e-81 307.0 215 71.6
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 2.1e-81 306.6 289 58.1
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.7e-81 306.2 212 71.2
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 4.7e-81 305.4 225 68.9
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 4.7e-81 305.4 220 72.3
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.0e-80 302.4 220 69.1
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 8.8e-80 301.2 217 67.3
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 6.3e-78 295.0 226 67.3
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 4.2e-74 282.3 177 80.2
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.5e-68 262.7 169 76.3
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.7e-68 261.5 190 72.6
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.1e-66 257.7 223 60.5
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 7.2e-66 255.0 347 45.5
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.7e-65 252.3 166 74.7
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 2.6e-63 246.5 180 70.6
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.8e-63 244.6 193 66.8
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.8e-63 244.6 204 65.7
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.7e-62 242.7 240 56.7
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 9.2e-61 238.0 172 69.2
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.2e-60 237.7 220 58.6
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.2e-60 237.7 190 68.9
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.2e-60 237.7 209 58.9
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.2e-60 237.7 209 58.9
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 2.0e-60 236.9 157 74.5
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.6e-59 231.5 173 70.5
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 9.5e-58 228.0 190 62.1
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.4e-53 214.2 201 58.2
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 2.4e-53 213.4 231 51.9
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 8.6e-51 204.9 154 68.2
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 8.0e-49 198.4 185 55.7
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.3e-48 196.8 234 46.6
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 3.3e-42 176.4 165 57.6
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 2.4e-29 133.7 241 36.5
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 4.6e-28 129.4 254 36.6
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.4e-24 117.9 68 80.9
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 8.4e-22 108.6 213 33.8
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.7e-20 103.6 209 34.0
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 3.9e-19 99.8 236 32.2
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.5e-15 87.8 244 29.1
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 1.0e-11 75.1 65 55.4
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 3.9e-11 73.2 72 58.3
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.3e-10 69.7 45 73.3
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 2.1e-09 67.4 42 69.0
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.8e-08 64.3 181 30.9
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.6e-07 60.5 41 65.9
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 6.4e-06 55.8 72 38.9
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 6.4e-06 55.8 72 38.9
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 6.4e-06 55.8 72 38.9


User provided reference genes

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