Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29979 Trifolium pratense HOM05D003192 ORTHO05D003596 2.2e-48 195.3 98 100.0
TPR.G39012 Trifolium pratense HOM05D003192 ORTHO05D003596 1.8e-29 132.5 105 70.5
Medtr5g032080 Medicago truncatula HOM05D003192 ORTHO05D003596 2.6e-25 118.6 105 62.9
Glyma.09G199166 Glycine max HOM05D003192 ORTHO05D003596 9.7e-20 100.1 79 68.4
Lj2g0008675 Lotus japonicus HOM05D003192 ORTHO05D003596 1.7e-19 99.4 69 75.4
Glyma.01G023100 Glycine max HOM05D003192 ORTHO05D003596 2.2e-19 99.0 79 67.1
VMungo1215G1834 Vigna mungo HOM05D003192 ORTHO05D003596 4.8e-19 97.8 79 67.1
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 1.8e-18 95.9 79 67.1
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 5.3e-18 94.4 76 63.2
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 7.0e-18 94.0 76 63.2
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 4.5e-17 91.3 76 63.2
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 3.2e-15 85.1 66 63.6
arahy.Tifrunner.gnm1.ann1.ND4N8X Arachis hypogaea HOM05D003192 ORTHO05D003596 4.2e-15 84.7 75 57.3
arahy.Tifrunner.gnm1.ann1.QT15T4 Arachis hypogaea HOM05D003192 ORTHO05D003596 4.2e-15 84.7 75 57.3
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 9.4e-15 83.6 77 51.9
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 1.6e-14 82.8 79 51.9
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 2.1e-14 82.4 77 51.9
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 3.6e-14 81.6 79 54.4
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 3.6e-14 81.6 77 54.5
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 4.7e-14 81.3 79 53.2
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 1.0e-13 80.1 68 58.8
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 1.0e-13 80.1 77 53.2
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 1.4e-13 79.7 79 49.4
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 4.0e-13 78.2 77 50.6
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 4.0e-13 78.2 79 50.6
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 2.0e-12 75.9 69 58.0
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 2.6e-12 75.5 79 49.4
Ca_22705_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 2.6e-12 75.5 103 44.7
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 3.4e-12 75.1 79 51.9
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 7.5e-12 73.9 71 56.3
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 3.7e-11 71.6 103 38.8
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 1.4e-10 69.7 82 40.2
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 1.4e-10 69.7 79 44.3
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 1.4e-10 69.7 79 45.6
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.4e-10 69.7 79 49.4
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 1.8e-10 69.3 76 48.7
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 2.4e-10 68.9 76 47.4
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 3.1e-10 68.6 89 42.7
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 3.1e-10 68.6 74 48.6
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 3.1e-10 68.6 77 49.4
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 3.1e-10 68.6 79 44.3
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 4.1e-10 68.2 69 47.8
Lj2P534T19 Lonicera japonica HOM05D003192 ORTHO05D003596 4.1e-10 68.2 79 44.3
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 4.1e-10 68.2 71 45.1
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 9.1e-10 67.0 76 48.7
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 9.1e-10 67.0 67 46.3
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 9.1e-10 67.0 79 45.6
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 1.6e-09 66.2 99 38.4
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.6e-09 66.2 76 46.1
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 2.7e-09 65.5 77 42.9
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 2.7e-09 65.5 79 45.6
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 3.5e-09 65.1 77 40.3
Dinv36931 Davidia involucrata HOM05D003192 ORTHO05D003596 4.5e-09 64.7 79 45.6
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 4.5e-09 64.7 79 44.3
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 4.5e-09 64.7 62 45.2
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 4.5e-09 64.7 64 50.0
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 5.9e-09 64.3 79 44.3
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 5.9e-09 64.3 79 44.3
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 7.7e-09 63.9 63 57.1
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 7.7e-09 63.9 57 56.1
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 7.7e-09 63.9 103 38.8
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 1.0e-08 63.5 68 42.6
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.0e-08 63.5 79 45.6
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 1.3e-08 63.2 68 41.2
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 1.3e-08 63.2 68 47.1
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 1.7e-08 62.8 68 42.6
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.7e-08 62.8 76 43.4
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.7e-08 62.8 76 43.4
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.7e-08 62.8 76 43.4
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 1.7e-08 62.8 79 41.8
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 2.2e-08 62.4 68 41.2
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 2.2e-08 62.4 76 43.4
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.2e-08 62.4 65 49.2
Nitab4.5_0007624g0010 Nicotiana tabacum HOM05D003192 ORTHO05D003596 2.2e-08 62.4 76 44.7
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 2.2e-08 62.4 79 45.6
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 3.8e-08 61.6 77 45.5
FAN23G2850 Fragaria x ananassa HOM05D003192 ORTHO05D003596 3.8e-08 61.6 77 45.5
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 5.0e-08 61.2 68 41.2
CAN.G1344.16 Capsicum annuum HOM05D003192 ORTHO05D003596 5.0e-08 61.2 79 43.0
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 6.5e-08 60.8 76 42.1
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 6.5e-08 60.8 76 42.1
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 6.5e-08 60.8 89 40.4
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 8.5e-08 60.5 72 45.8
HanXRQChr11g0346961 Helianthus annuus HOM05D003192 ORTHO05D003596 8.5e-08 60.5 68 47.1
Lsat_1_v5_gn_2_70360 Lactuca sativa HOM05D003192 ORTHO05D003596 8.5e-08 60.5 67 41.8
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 1.5e-07 59.7 61 49.2
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 1.5e-07 59.7 61 47.5
ECA233G2454 Erigeron canadensis HOM05D000169 ORTHO05D003596 1.9e-07 59.3 76 43.4
FvH4_2g11711 Fragaria vesca HOM05D003192 ORTHO05D003596 2.5e-07 58.9 84 41.7
FAN24G0742 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.5e-07 58.9 84 41.7
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 3.2e-07 58.5 68 39.7
BcaB03g12311 Brassica carinata HOM05D003192 ORTHO05D003596 4.2e-07 58.2 70 38.6
ECA238G4297 Erigeron canadensis HOM05D003192 ORTHO05D003596 4.2e-07 58.2 76 43.4
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 4.2e-07 58.2 65 47.7
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 4.2e-07 58.2 89 40.4
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 9.4e-07 57.0 77 37.7
EL10Ac9g22072 Beta vulgaris HOM05D003192 ORTHO05D003596 1.2e-06 56.6 76 40.8
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 1.6e-06 56.2 68 38.2
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 2.7e-06 55.5 68 38.2
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 2.7e-06 55.5 68 38.2
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 2.7e-06 55.5 68 38.2
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 3.6e-06 55.1 79 35.4
Cfa005735 Carpinus fangiana HOM05D003192 ORTHO05D003596 4.7e-06 54.7 65 38.5
RcHm_v2.0_Chr6g0271001 Rosa chinensis HOM05D003192 ORTHO05D003596 4.7e-06 54.7 79 36.7


User provided reference genes

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