Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 0.0e+00 1582.0 882 100.0
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 0.0e+00 1414.4 823 92.1
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1402.1 823 91.1
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 0.0e+00 1356.3 826 89.0
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 0.0e+00 1314.7 823 85.3
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 0.0e+00 1283.9 824 82.5
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1275.0 823 81.4
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 0.0e+00 1271.9 823 81.4
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1261.5 823 81.9
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 0.0e+00 1182.5 863 75.1
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1124.8 861 70.4
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1124.0 825 71.9
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1116.7 824 72.5
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1096.6 824 70.6
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1096.6 826 72.0
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1092.0 823 71.2
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1091.6 825 70.9
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1088.2 823 71.2
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1083.9 823 70.8
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1078.9 823 70.8
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1076.6 825 70.4
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 825 70.5
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 4.2e-311 1071.2 824 69.4
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.6e-310 1069.3 830 70.0
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 6.6e-309 1063.9 824 70.3
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.1e-308 1063.1 824 70.5
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 1.5e-308 1062.8 824 70.3
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 1.9e-308 1062.4 793 72.9
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.1e-306 1056.6 825 70.3
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 6.8e-306 1053.9 826 69.1
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 9.8e-305 1050.0 825 69.1
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.1e-303 1046.6 826 69.2
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 2.7e-302 1042.0 793 70.7
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 2.5e-300 1035.4 823 68.5
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 4.3e-300 1034.6 824 67.8
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 5.2e-298 1027.7 822 66.7
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 2.2e-296 1022.3 822 66.9
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 8.4e-296 1020.4 822 66.8
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 1.1e-295 1020.0 825 67.2
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 4.1e-295 1018.1 824 67.2
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 5.4e-295 1017.7 825 67.0
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 9.2e-295 1016.9 825 67.8
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 7.8e-294 1013.8 827 66.7
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 8.6e-293 1010.4 825 66.7
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 1.5e-292 1009.6 828 67.3
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 4.3e-292 1008.1 824 66.5
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.3e-292 1007.3 826 67.4
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 2.0e-289 999.2 761 70.8
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 4.4e-289 998.0 824 65.5
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 4.9e-288 994.6 819 65.6
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 1.1e-287 993.4 823 65.4
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 2.4e-287 992.3 833 64.3
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 4.2e-287 991.5 897 62.1
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 1.2e-286 989.9 848 64.5
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 5.1e-285 984.6 825 65.0
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 6.2e-283 977.6 825 65.5
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.2e-281 973.4 846 64.1
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 7.6e-281 970.7 670 78.2
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 2.9e-280 968.8 822 64.7
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 4.9e-280 968.0 824 64.2
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 5.4e-279 964.5 825 63.9
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 7.1e-279 964.1 824 64.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 1.6e-278 963.0 836 64.6
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 2.1e-278 962.6 825 64.0
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 6.0e-278 961.1 848 62.6
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 7.9e-278 960.7 824 62.7
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 6.7e-277 957.6 824 63.1
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 4.3e-276 954.9 824 62.7
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.3e-275 953.4 824 62.7
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 8.1e-275 950.7 761 67.5
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 1.1e-274 950.3 828 63.8
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.4e-274 949.9 824 62.9
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 1.8e-274 949.5 824 62.9
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 2.4e-274 949.1 824 62.4
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 5.3e-274 948.0 824 62.5
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 6.9e-274 947.6 824 62.5
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 4.5e-273 944.9 822 63.7
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.8e-269 932.9 761 66.5
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.8e-269 932.9 823 63.1
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 3.0e-269 932.2 840 61.3
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 1.3e-267 926.8 823 62.3
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 3.7e-267 925.2 824 63.2
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 8.1e-267 924.1 824 62.6
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.5e-265 919.8 867 59.4
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.6e-262 909.8 922 56.7
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 5.1e-261 904.8 835 61.1
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 8.7e-261 904.0 819 61.4
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.2e-257 893.6 824 60.6
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 8.5e-240 834.3 825 54.9
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.4e-237 827.0 827 54.4
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 5.2e-237 825.1 824 57.3
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 1.3e-235 820.5 628 73.4
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.3e-224 783.9 680 63.5
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 1.7e-224 783.5 829 55.9
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 5.7e-220 768.5 824 53.5
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 4.8e-219 765.4 870 50.7
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-196 691.0 600 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 6.4e-163 578.9 777 44.4
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 5.3e-157 559.3 836 43.1
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 8.4e-155 552.0 792 42.4
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 3.9e-152 543.1 544 57.5
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 2.6e-140 503.8 863 37.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 2.2e-139 500.7 838 38.7
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 1.9e-138 497.7 793 38.8
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 6.1e-137 492.7 404 68.3
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.8e-134 483.0 490 55.7
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 4.1e-133 479.9 380 65.3
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 3.4e-132 476.9 329 72.6
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 9.8e-103 379.0 274 71.2
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.8e-96 358.2 493 47.7
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 6.3e-94 349.7 280 63.9
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.6e-92 345.1 280 61.1
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.6e-89 335.1 311 58.8
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 5.2e-72 276.9 241 65.6
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 4.3e-66 257.3 220 65.5
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 3.5e-52 211.1 816 25.6
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.7e-51 208.8 352 39.8
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 7.4e-42 176.8 848 23.5
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 8.4e-38 163.3 168 54.8
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 2.5e-37 161.8 119 69.7
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 5.5e-37 160.6 122 70.5
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.0e-35 156.4 245 43.7
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.6e-33 149.1 212 45.8
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 9.0e-32 143.3 98 76.5
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.5e-31 142.5 117 70.9
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 3.2e-29 134.8 86 83.7
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 5.5e-29 134.0 101 72.3
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 7.4e-26 123.6 154 52.6
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 8.2e-25 120.2 71 80.3
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 8.2e-25 120.2 71 80.3
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.3e-22 112.8 70 82.9
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 3.8e-22 111.3 180 42.8
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.3e-16 90.9 134 37.3
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.8e-14 84.7 79 57.0
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 2.7e-12 78.6 68 63.2
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 8.2e-09 67.0 47 74.5
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.7e-06 59.3 116 32.8


User provided reference genes

Program Settings