Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 1.4e-59 232.6 112 100.0
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 1.7e-36 156.0 107 72.9
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 9.4e-35 150.2 111 62.2
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 1.2e-34 149.8 109 66.1
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 2.1e-34 149.1 111 61.3
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 2.1e-34 149.1 111 61.3
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 6.1e-34 147.5 100 72.0
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 1.0e-33 146.7 77 88.3
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.9e-33 144.8 111 59.5
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 6.7e-33 144.1 109 62.4
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 8.8e-33 143.7 114 64.0
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 4.4e-32 141.4 117 59.0
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 1.7e-31 139.4 115 58.3
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 2.4e-30 135.6 105 57.1
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 5.3e-30 134.4 105 57.1
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 7.7e-29 130.6 116 55.2
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.3e-28 129.8 108 55.6
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 1.7e-28 129.4 139 48.2
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 6.5e-28 127.5 108 54.6
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 6.5e-28 127.5 101 57.4
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 6.5e-28 127.5 112 56.2
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 1.4e-27 126.3 98 56.1
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 2.5e-27 125.6 105 53.3
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 4.2e-27 124.8 110 54.5
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 1.2e-26 123.2 109 50.5
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 1.6e-26 122.9 99 55.6
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 3.6e-26 121.7 93 54.8
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 4.7e-26 121.3 93 55.9
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 8.0e-26 120.6 93 63.4
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 8.0e-26 120.6 109 51.4
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 8.0e-26 120.6 109 51.4
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 1.0e-25 120.2 104 53.8
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.8e-25 119.4 98 52.0
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.8e-25 119.4 111 54.1
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 3.0e-25 118.6 93 54.8
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 5.2e-25 117.9 98 55.1
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 6.7e-25 117.5 90 60.0
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 6.7e-25 117.5 93 53.8
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 8.8e-25 117.1 93 51.6
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 1.1e-24 116.7 98 51.0
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.1e-24 116.7 93 51.6
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 1.5e-24 116.3 87 57.5
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 7.4e-24 114.0 92 57.6
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 7.4e-24 114.0 96 52.1
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 9.7e-24 113.6 93 53.8
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 9.7e-24 113.6 98 53.1
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.3e-23 113.2 101 54.5
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.3e-23 113.2 96 52.1
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 6.3e-23 110.9 105 50.5
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.8e-22 109.4 94 54.3
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 7.0e-22 107.5 93 49.5
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 9.1e-22 107.1 97 52.6
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.2e-21 106.7 95 49.5
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.2e-21 106.7 113 47.8
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.6e-21 106.3 83 54.2
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 2.6e-21 105.5 107 45.8
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 7.7e-21 104.0 94 51.1
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 7.7e-21 104.0 96 50.0
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.7e-20 102.8 93 47.3
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 1.7e-20 102.8 93 47.3
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 2.9e-20 102.1 94 50.0
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 2.9e-20 102.1 96 46.9
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 3.8e-20 101.7 96 47.9
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 3.8e-20 101.7 117 45.3
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 8.5e-20 100.5 94 48.9
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 8.5e-20 100.5 99 45.5
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 8.5e-20 100.5 95 48.4
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 2.5e-19 99.0 107 43.9
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.5e-19 99.0 109 49.5
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 5.5e-19 97.8 95 44.2
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 7.2e-19 97.4 94 48.9
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 7.2e-19 97.4 110 42.7
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 7.2e-19 97.4 96 45.8
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 9.4e-19 97.1 90 48.9
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 1.2e-18 96.7 93 45.2
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.2e-18 96.7 95 47.4
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.2e-18 96.7 77 54.5
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.2e-18 96.7 106 43.4
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 1.6e-18 96.3 99 44.4
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 2.7e-18 95.5 93 45.2
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.7e-18 95.5 103 44.7
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 3.6e-18 95.1 93 45.2
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 3.6e-18 95.1 90 50.0
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 3.6e-18 95.1 105 45.7
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 6.1e-18 94.4 92 44.6
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 8.0e-18 94.0 93 47.3
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 2.3e-17 92.4 93 43.0
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 3.0e-17 92.0 103 43.7
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 6.7e-17 90.9 104 43.3
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 8.8e-17 90.5 95 44.2
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 8.8e-17 90.5 95 44.2
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.2e-16 90.1 107 45.8
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.2e-16 90.1 85 50.6
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.5e-16 89.7 89 42.7
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.5e-16 89.7 89 42.7
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 1.5e-16 89.7 91 46.2
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.0e-16 89.4 85 50.6
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.0e-16 89.4 85 50.6
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 2.6e-16 89.0 95 44.2
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 4.4e-16 88.2 109 44.0
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.7e-16 87.8 90 46.7
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 9.7e-16 87.0 89 46.1
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 9.7e-16 87.0 91 46.2
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 9.7e-16 87.0 109 43.1
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 9.7e-16 87.0 91 48.4
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 9.7e-16 87.0 91 48.4
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 1.3e-15 86.7 105 42.9
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 1.7e-15 86.3 87 46.0
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 1.7e-15 86.3 90 42.2
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 2.2e-15 85.9 90 45.6
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 2.8e-15 85.5 89 44.9
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 4.8e-15 84.7 89 43.8
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 4.8e-15 84.7 91 45.1
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 4.8e-15 84.7 108 44.4
TPR.G22580 Trifolium pratense HOM05D003174 ORTHO05D003439 6.3e-15 84.3 91 51.6
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 8.2e-15 84.0 87 46.0
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 1.4e-14 83.2 55 69.1
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 1.8e-14 82.8 76 51.3
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.4e-14 82.4 88 48.9
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 2.4e-14 82.4 88 46.6
arahy.Tifrunner.gnm1.ann1.QHLS1J Arachis hypogaea HOM05D003174 ORTHO05D003439 3.1e-14 82.0 73 53.4
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.1e-14 82.0 90 44.4
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 3.1e-14 82.0 88 48.9
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 3.1e-14 82.0 87 39.1
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.1e-14 81.6 88 48.9
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 4.1e-14 81.6 89 46.1
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 4.1e-14 81.6 88 45.5
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 7.0e-14 80.9 91 45.1
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 9.1e-14 80.5 108 43.5
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 1.2e-13 80.1 89 43.8
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 1.2e-13 80.1 89 43.8
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.2e-13 80.1 89 44.9
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.2e-13 80.1 59 61.0
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 1.6e-13 79.7 108 41.7
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 2.0e-13 79.3 103 40.8
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 2.0e-13 79.3 91 41.8
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 2.7e-13 79.0 89 44.9
arahy.Tifrunner.gnm1.ann1.4Q6X4E Arachis hypogaea HOM05D003174 ORTHO05D003439 2.7e-13 79.0 53 66.0
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 3.5e-13 78.6 88 46.6
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 4.5e-13 78.2 89 40.4
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 5.9e-13 77.8 57 57.9
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 5.9e-13 77.8 89 42.7
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 5.9e-13 77.8 112 38.4
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 5.9e-13 77.8 112 38.4
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 7.7e-13 77.4 89 43.8
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.0e-12 77.0 89 41.6
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 1.0e-12 77.0 87 47.1
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 1.0e-12 77.0 91 40.7
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 1.3e-12 76.6 95 40.0
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 1.7e-12 76.3 112 40.2
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 2.2e-12 75.9 87 41.4
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 2.2e-12 75.9 89 43.8
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 2.9e-12 75.5 89 43.8
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 2.9e-12 75.5 112 39.3
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 2.9e-12 75.5 89 41.6
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 3.8e-12 75.1 97 43.3
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.0e-12 74.7 89 40.4
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.0e-12 74.7 89 40.4
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 8.5e-12 73.9 92 40.2
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 8.5e-12 73.9 112 42.0
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 2.5e-11 72.4 78 43.6
arahy.Tifrunner.gnm1.ann1.SHBY5H Arachis hypogaea HOM05D003174 ORTHO05D003439 4.2e-11 71.6 53 58.5
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 4.2e-11 71.6 82 39.0
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 4.2e-11 71.6 99 39.4
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 9.4e-11 70.5 88 39.8
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 1.6e-10 69.7 89 39.3
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.7e-10 68.9 64 53.1
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 4.7e-10 68.2 137 26.3
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 1.8e-09 66.2 106 38.7
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.3e-09 65.9 89 40.4
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 4.0e-09 65.1 111 34.2
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 6.8e-09 64.3 92 38.0
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 1.5e-08 63.2 106 34.0
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 1.5e-08 63.2 57 49.1
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.5e-08 63.2 90 37.8
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 2.6e-08 62.4 90 37.8
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 3.4e-08 62.0 134 32.1
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 5.7e-08 61.2 116 33.6
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 9.8e-08 60.5 55 50.9
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 9.8e-08 60.5 99 36.4
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.2e-07 59.3 45 53.3
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 6.3e-07 57.8 91 36.3
SEGI_15530 Sequoiadendron giganteum HOM05D057352 ORTHO05D003439 1.1e-06 57.0 105 34.3
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.8e-06 56.2 126 31.0


User provided reference genes

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