Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 5.5e-192 674.1 331 100.0
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 3.3e-160 568.5 338 83.7
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 4.6e-154 548.1 344 79.9
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 1.6e-151 539.7 329 78.4
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 2.1e-143 512.7 329 77.5
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 1.2e-141 506.9 345 75.7
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 1.2e-138 496.9 329 75.4
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 2.7e-138 495.7 306 79.1
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 2.5e-136 489.2 343 72.0
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 3.2e-131 472.2 301 77.7
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 2.4e-118 429.5 302 70.5
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 7.6e-117 424.5 349 65.3
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 7.1e-115 417.9 284 71.5
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 3.5e-114 415.6 284 70.8
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 3.5e-114 415.6 285 69.8
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.0e-113 414.1 305 66.2
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 1.3e-113 413.7 284 68.7
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.8e-113 413.3 284 70.1
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 3.0e-113 412.5 339 62.8
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 5.1e-113 411.8 287 69.3
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 1.5e-112 410.2 285 69.5
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 4.3e-112 408.7 305 65.9
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 7.4e-112 407.9 319 63.9
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 2.8e-111 406.0 282 69.5
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 6.9e-110 401.4 337 61.4
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 1.2e-109 400.6 280 68.6
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 1.2e-109 400.6 339 61.4
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 3.4e-109 399.1 285 67.7
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 1.0e-108 397.5 287 66.9
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 1.3e-108 397.1 331 60.7
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.9e-107 393.3 317 59.6
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 4.2e-107 392.1 281 69.4
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 9.3e-107 391.0 312 59.9
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 9.3e-107 391.0 311 60.8
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 2.7e-106 389.4 315 61.9
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 3.5e-106 389.0 311 61.1
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 3.5e-106 389.0 313 62.6
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 4.6e-106 388.7 281 68.3
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 4.6e-106 388.7 317 58.7
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 6.0e-106 388.3 283 67.1
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 7.9e-106 387.9 311 60.8
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.0e-105 387.5 332 59.3
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 2.3e-105 386.3 332 59.3
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 5.1e-105 385.2 306 61.8
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 5.1e-105 385.2 306 61.8
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 5.1e-105 385.2 314 61.5
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 2.5e-104 382.9 299 63.9
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 4.3e-104 382.1 282 66.3
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 7.4e-104 381.3 284 64.1
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 7.4e-104 381.3 320 60.6
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 9.6e-104 380.9 282 65.6
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 1.3e-103 380.6 307 63.5
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 3.7e-103 379.0 284 64.1
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 3.7e-103 379.0 292 64.0
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 4.8e-103 378.6 282 64.9
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 1.1e-102 377.5 283 64.3
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 1.8e-102 376.7 282 64.9
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 6.9e-102 374.8 281 63.7
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 1.2e-101 374.0 302 63.2
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 1.2e-101 374.0 289 63.7
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 1.5e-101 373.6 281 64.8
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 1.5e-101 373.6 331 57.7
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 2.6e-101 372.9 354 56.8
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 2.6e-101 372.9 284 66.5
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 6.5e-100 368.2 320 59.1
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 1.1e-99 367.5 283 63.6
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 2.1e-98 363.2 283 62.5
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.8e-97 360.1 323 60.1
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 3.9e-97 359.0 284 62.0
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 3.9e-97 359.0 323 57.0
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 1.5e-96 357.1 355 52.1
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 1.1e-94 350.9 283 60.8
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 3.1e-94 349.4 288 60.1
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 4.1e-94 349.0 336 53.6
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 5.3e-94 348.6 291 58.8
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 1.1e-91 340.9 284 61.6
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 2.5e-91 339.7 336 53.9
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 4.6e-90 335.5 305 54.4
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.0e-89 334.3 283 60.1
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 2.5e-88 329.7 326 52.8
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 5.3e-86 322.0 248 63.3
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 2.0e-85 320.1 246 63.8
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 2.6e-85 319.7 302 54.3
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 6.5e-84 315.1 320 52.2
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 6.7e-81 305.1 323 50.5
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 1.1e-80 304.3 348 50.3
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 4.8e-79 298.9 327 46.5
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 3.1e-78 296.2 272 56.6
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.1e-78 295.8 224 62.9
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 2.0e-77 293.5 281 53.4
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 5.9e-77 292.0 283 55.1
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 2.0e-72 276.9 200 65.5
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 9.7e-72 274.6 263 53.6
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 2.2e-71 273.5 291 48.1
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 3.6e-66 256.1 290 43.1
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 7.2e-59 231.9 320 41.2
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 2.1e-58 230.3 286 42.7
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 3.7e-55 219.5 210 50.0
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 7.3e-51 205.3 144 64.6
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 4.7e-50 202.6 203 52.7
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 3.7e-47 193.0 153 58.8
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 1.2e-45 188.0 136 62.5
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 2.7e-45 186.8 279 39.4
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 3.4e-40 169.9 387 31.3
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 8.9e-33 145.2 301 34.9
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.4e-30 137.9 168 45.8
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.2e-26 124.8 158 43.7
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 2.7e-21 107.1 67 70.1
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 1.1e-19 101.7 99 51.5
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 2.0e-16 90.9 74 55.4
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 4.3e-11 73.2 151 32.5
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.3e-09 66.2 190 29.5
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.4e-07 59.3 193 27.5
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 3.2e-06 57.0 148 29.1
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 5.4e-06 56.2 152 30.3
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 7.1e-06 55.8 190 26.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 9.3e-06 55.5 154 31.2


User provided reference genes

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