Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 5.1e-236 820.8 466 100.0
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.6e-189 666.4 473 77.0
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 9.9e-155 550.8 398 74.4
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 9.9e-155 550.8 398 74.4
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 7.1e-153 544.7 402 73.9
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 5.7e-134 481.9 476 59.9
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.4e-124 450.7 486 56.0
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 6.9e-124 448.4 483 55.3
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.2e-122 443.4 492 55.7
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.0e-119 434.5 492 54.9
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 2.0e-118 430.3 476 58.4
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 6.3e-117 425.2 492 54.3
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.3e-114 417.5 474 53.4
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 4.1e-108 396.0 484 50.0
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 8.5e-106 388.3 476 49.2
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 2.1e-104 383.6 412 56.1
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.8e-103 378.3 494 47.0
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.0e-102 377.1 475 46.5
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.6e-102 376.7 483 48.2
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 5.7e-102 375.6 495 47.9
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 2.8e-101 373.2 479 48.4
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.1e-100 371.3 485 45.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.4e-100 370.9 467 46.3
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.3e-100 369.0 468 46.4
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 9.1e-100 368.2 481 46.4
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.2e-99 367.9 485 45.6
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.2e-99 367.9 494 45.7
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 1.6e-99 367.5 501 47.1
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.6e-99 367.5 478 46.9
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.6e-99 367.5 481 47.0
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.7e-99 366.7 481 46.2
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.5e-99 365.9 503 46.5
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 7.7e-99 365.2 478 46.7
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.0e-98 364.8 467 47.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 2.9e-98 363.2 494 45.7
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.9e-98 363.2 483 47.2
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 2.9e-98 363.2 531 45.6
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 5.0e-98 362.5 510 46.3
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 6.5e-98 362.1 469 45.8
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.5e-97 360.9 471 45.6
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.5e-97 360.9 465 45.8
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 4.2e-97 359.4 493 48.9
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 5.5e-97 359.0 488 45.7
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 9.4e-97 358.2 485 45.2
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.6e-96 356.3 529 43.9
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 6.1e-96 355.5 474 46.0
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 6.1e-96 355.5 478 47.5
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 8.0e-96 355.1 480 45.6
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.3e-95 353.6 464 46.6
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 6.8e-95 352.1 476 48.5
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.8e-95 351.7 477 47.0
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 8.8e-95 351.7 500 42.6
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.6e-94 350.1 477 47.2
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 3.4e-94 349.7 461 45.1
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 3.4e-94 349.7 477 47.2
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 7.5e-94 348.6 469 44.8
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 7.5e-94 348.6 469 44.8
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.5e-94 348.6 477 47.2
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.8e-93 346.7 463 44.9
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 6.3e-93 345.5 485 48.7
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 8.3e-93 345.1 517 43.3
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 8.3e-93 345.1 517 43.3
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.4e-92 344.4 491 45.0
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.8e-92 344.0 515 43.1
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.4e-92 343.6 488 45.5
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 5.4e-92 342.4 485 44.1
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 9.1e-92 341.7 479 43.6
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.6e-91 340.9 485 43.9
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.7e-91 340.1 498 43.0
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 7.7e-91 338.6 479 43.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 7.7e-91 338.6 490 44.1
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.0e-90 338.2 480 45.0
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.0e-90 338.2 513 45.4
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.3e-90 337.8 481 43.9
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.3e-90 337.8 509 41.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.2e-90 337.0 445 45.4
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.9e-89 334.0 504 41.9
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 7.2e-89 332.0 493 42.6
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.2e-88 331.3 475 45.9
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 3.4e-86 323.2 475 45.3
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.9e-85 319.3 464 44.2
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.8e-84 317.4 520 41.2
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 4.1e-84 316.2 476 43.1
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.6e-83 314.3 518 41.9
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.5e-83 313.2 485 41.9
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 5.9e-83 312.4 321 53.0
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 5.9e-83 312.4 324 53.1
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 7.7e-83 312.0 478 41.8
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 7.7e-83 312.0 476 42.0
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.7e-82 310.8 514 40.9
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 4.3e-81 306.2 481 42.0
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.1e-80 303.9 476 39.3
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.5e-78 297.7 473 41.4
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 3.4e-78 296.6 462 43.3
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 5.7e-78 295.8 371 47.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.7e-77 294.3 455 41.3
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.1e-76 291.6 472 44.9
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 5.4e-76 289.3 463 41.9
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 7.8e-75 285.4 471 41.8
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.5e-73 281.2 468 42.7
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.4e-71 274.6 467 41.3
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.4e-71 274.6 474 39.9
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 4.0e-71 273.1 330 48.5
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 5.8e-70 269.2 555 36.0
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 9.8e-70 268.5 464 40.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.0e-67 260.8 471 41.4
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 3.5e-67 260.0 458 39.7
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 7.8e-67 258.8 470 38.3
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.9e-65 254.2 334 43.1
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.6e-65 252.7 463 38.2
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.8e-63 247.7 476 38.7
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.7e-61 241.1 406 41.1
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.4e-60 237.3 438 40.9
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 5.8e-54 216.1 475 37.3
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 7.1e-52 209.1 418 33.7
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.1e-51 207.6 365 36.2
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.6e-48 198.0 489 33.1
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.4e-47 194.9 394 36.0
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 4.0e-47 193.4 493 31.6
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 8.9e-47 192.2 434 34.3
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 7.6e-46 189.1 464 33.6
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 7.1e-44 182.6 731 26.4
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-33 148.3 396 31.8
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.3e-32 145.2 402 34.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 8.4e-29 132.5 209 42.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.2e-27 128.6 348 30.2
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.6e-27 126.7 213 43.2
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 4.3e-25 120.2 661 22.7
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.1e-23 114.0 210 41.4
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 4.0e-23 113.6 208 40.4
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 7.9e-19 99.4 206 39.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.3e-18 98.6 551 23.8
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.3e-18 98.6 395 28.9
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 5.1e-18 96.7 76 55.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 4.3e-17 93.6 597 22.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.6e-16 91.7 131 34.4
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.4e-15 87.8 154 35.7
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 5.9e-14 83.2 208 36.5
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.7e-13 81.6 211 33.2
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.5e-12 77.8 162 35.2
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 5.5e-12 76.6 225 32.4
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 3.6e-11 73.9 203 32.5
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 5.1e-10 70.1 141 36.2
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 5.1e-10 70.1 179 30.7
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.3e-08 65.5 235 29.8
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.6e-08 65.1 54 51.9
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 2.8e-08 64.3 96 35.4
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.8e-08 64.3 140 39.3
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 3.7e-08 63.9 47 57.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.3e-07 60.1 53 45.3
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 6.9e-07 59.7 101 36.6
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 9.0e-07 59.3 112 40.2
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 1.2e-06 58.9 96 32.3
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 1.2e-06 58.9 107 32.7
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 1.5e-06 58.5 96 32.3
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 1.5e-06 58.5 101 32.7
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 2.6e-06 57.8 127 28.3
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 3.4e-06 57.4 96 30.2
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 3.4e-06 57.4 166 30.1
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 3.4e-06 57.4 93 36.6
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 5.9e-06 56.6 95 30.5
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 5.9e-06 56.6 67 47.8
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 5.9e-06 56.6 107 30.8
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 7.7e-06 56.2 97 32.0


User provided reference genes

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