Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 3.8e-185 651.4 327 100.0
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 3.2e-160 568.5 326 88.7
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.2e-145 519.2 308 84.4
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 3.0e-134 482.3 325 75.7
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 3.0e-134 482.3 323 75.9
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.2e-133 480.3 323 73.1
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 7.5e-133 477.6 323 75.5
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 2.8e-127 459.1 321 72.3
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 6.8e-126 454.5 324 71.9
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 5.4e-123 444.9 323 71.2
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.0e-121 440.7 320 72.2
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.2e-101 374.0 301 61.8
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 9.9e-101 370.9 304 60.9
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 2.2e-100 369.8 307 61.2
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 8.3e-100 367.9 304 60.9
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 9.2e-99 364.4 301 59.5
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 1.6e-98 363.6 304 60.2
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 2.7e-98 362.8 309 58.3
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 3.5e-98 362.5 304 61.5
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 4.6e-98 362.1 303 60.1
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 6.0e-98 361.7 307 57.7
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 7.8e-98 361.3 307 61.2
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 1.7e-97 360.1 317 56.5
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 3.9e-97 359.0 307 59.0
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 1.5e-96 357.1 300 57.0
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 4.3e-96 355.5 292 62.3
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 2.8e-95 352.8 307 56.4
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.9e-92 342.8 304 58.2
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.9e-91 340.1 307 57.3
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 3.2e-91 339.3 309 57.0
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 5.4e-91 338.6 304 55.9
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.0e-89 334.3 304 57.2
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.0e-89 334.3 304 57.2
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.0e-89 332.8 291 58.8
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 1.9e-88 330.1 288 56.2
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 7.6e-85 318.2 312 56.1
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 2.1e-82 310.1 287 58.2
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 1.0e-81 307.8 298 52.7
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 1.3e-81 307.4 298 52.0
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 1.7e-81 307.0 298 51.7
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 3.9e-81 305.8 291 52.9
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 1.5e-80 303.9 291 52.6
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 1.5e-80 303.9 299 51.8
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 2.1e-79 300.1 300 52.0
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 4.8e-79 298.9 297 51.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.4e-78 297.4 281 53.0
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 1.8e-78 297.0 290 54.1
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 9.0e-78 294.7 283 51.6
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 9.0e-78 294.7 250 59.6
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.2e-77 294.3 299 52.5
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 6.4e-76 288.5 286 53.1
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.4e-75 286.6 258 56.6
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 4.6e-74 282.3 294 50.3
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 1.0e-73 281.2 303 48.8
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 4.3e-72 275.8 276 52.2
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 7.4e-72 275.0 293 50.2
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.3e-71 274.2 292 47.9
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.6e-71 273.9 293 48.5
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 1.8e-70 270.4 296 48.6
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.8e-70 270.4 292 48.3
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 4.5e-69 265.8 213 64.3
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 7.6e-69 265.0 227 59.5
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 3.2e-67 259.6 337 46.9
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 7.1e-67 258.5 299 47.5
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 2.7e-66 256.5 283 48.1
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 4.6e-66 255.8 313 46.6
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 3.0e-65 253.1 220 58.2
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 1.6e-63 247.3 327 45.3
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 8.2e-63 245.0 290 45.2
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.8e-62 243.8 219 57.1
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.3e-60 237.7 234 53.8
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 5.0e-60 235.7 188 64.9
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 8.4e-60 235.0 188 64.9
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.9e-59 233.8 188 64.4
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 9.3e-59 231.5 294 41.2
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 2.7e-58 229.9 282 40.8
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 1.3e-57 227.6 289 40.5
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 3.1e-54 216.5 257 44.0
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 5.9e-53 212.2 156 68.6
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 2.5e-51 206.8 186 57.0
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 8.5e-36 155.2 150 51.3
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 2.3e-17 94.0 199 32.2
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 4.5e-13 79.7 111 36.9


User provided reference genes

Program Settings