Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 2.3e-83 312.4 161 100.0
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 2.0e-63 246.1 162 80.2
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 3.5e-60 235.3 165 76.4
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 8.4e-54 214.2 162 73.5
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 5.5e-53 211.5 162 72.8
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 7.1e-53 211.1 163 73.6
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 1.6e-52 209.9 162 72.8
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 9.7e-50 200.7 162 66.7
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 8.5e-46 187.6 164 66.5
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 4.2e-45 185.3 164 65.9
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 1.2e-44 183.7 162 63.0
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 2.5e-42 176.0 164 62.2
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 6.3e-33 144.8 162 51.2
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 1.4e-32 143.7 92 83.7
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 3.0e-27 125.9 151 53.0
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 1.5e-26 123.6 163 48.5
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.3e-26 122.5 175 45.7
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.3e-26 122.5 177 47.5
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 4.4e-26 122.1 174 45.4
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 5.3e-24 115.2 83 71.1
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 9.1e-24 114.4 138 52.2
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 1.2e-23 114.0 173 46.8
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 2.0e-23 113.2 163 44.2
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 2.6e-23 112.8 83 68.7
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 4.5e-23 112.1 149 46.3
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 4.5e-23 112.1 83 68.7
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 4.5e-23 112.1 173 45.7
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 4.5e-23 112.1 173 45.7
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 7.7e-23 111.3 173 43.9
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 1.3e-22 110.5 177 42.9
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 1.3e-22 110.5 81 70.4
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 2.2e-22 109.8 163 43.6
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.9e-22 109.4 173 45.1
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 3.8e-22 109.0 81 69.1
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 6.5e-22 108.2 81 66.7
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 6.5e-22 108.2 156 45.5
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 8.5e-22 107.8 176 43.8
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 1.1e-21 107.5 167 43.7
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 1.1e-21 107.5 163 45.4
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 1.1e-21 107.5 83 66.3
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.1e-21 107.5 83 62.7
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.1e-21 107.5 83 62.7
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 1.5e-21 107.1 175 40.0
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.5e-21 106.3 81 65.4
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 3.2e-21 105.9 83 65.1
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 4.2e-21 105.5 164 41.5
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 4.2e-21 105.5 81 66.7
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 7.2e-21 104.8 140 47.9
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 7.2e-21 104.8 83 63.9
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 9.4e-21 104.4 83 66.3
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 9.4e-21 104.4 83 66.3
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 9.4e-21 104.4 170 40.6
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 2.1e-20 103.2 83 63.9
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 3.6e-20 102.4 119 52.1
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 4.7e-20 102.1 176 39.8
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 4.7e-20 102.1 139 46.8
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 4.7e-20 102.1 83 63.9
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 8.0e-20 101.3 89 62.9
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 1.4e-19 100.5 80 63.8
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 1.4e-19 100.5 82 59.8
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 2.3e-19 99.8 81 65.4
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.3e-19 99.8 126 48.4
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 2.3e-19 99.8 81 61.7
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 3.0e-19 99.4 83 62.7
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 3.0e-19 99.4 80 63.8
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 4.0e-19 99.0 81 65.4
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 4.0e-19 99.0 80 63.8
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 4.0e-19 99.0 81 59.3
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 5.2e-19 98.6 94 55.3
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 6.8e-19 98.2 82 59.8
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 6.8e-19 98.2 126 47.6
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 1.2e-18 97.4 157 42.7
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 1.2e-18 97.4 145 40.7
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 1.5e-18 97.1 175 41.1
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 2.0e-18 96.7 177 40.7
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 3.4e-18 95.9 83 59.0
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 3.4e-18 95.9 166 42.8
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 4.4e-18 95.5 165 39.4
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 5.7e-18 95.1 157 40.8
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 7.5e-18 94.7 81 58.0
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 7.5e-18 94.7 81 58.0
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 7.5e-18 94.7 83 53.0
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 9.8e-18 94.4 81 55.6
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 9.8e-18 94.4 81 56.8
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 1.3e-17 94.0 134 44.8
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 1.3e-17 94.0 81 56.8
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 1.3e-17 94.0 178 38.8
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 1.7e-17 93.6 81 55.6
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.8e-17 92.8 83 55.4
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 2.8e-17 92.8 81 56.8
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 3.7e-17 92.4 81 55.6
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 4.8e-17 92.0 95 51.6
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 4.8e-17 92.0 81 56.8
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 4.8e-17 92.0 81 56.8
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 6.3e-17 91.7 81 55.6
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 8.3e-17 91.3 67 64.2
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 1.4e-16 90.5 107 44.9
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 1.4e-16 90.5 164 40.2
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 1.8e-16 90.1 81 51.9
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 1.8e-16 90.1 107 43.9
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 1.8e-16 90.1 89 52.8
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.4e-16 89.7 81 56.8
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 2.0e-15 86.7 83 50.6
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 3.5e-15 85.9 81 54.3
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 4.5e-15 85.5 83 53.0
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 4.5e-15 85.5 118 48.3
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 5.9e-15 85.1 82 54.9
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 7.7e-15 84.7 82 54.9
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 7.7e-15 84.7 82 54.9
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 1.0e-14 84.3 163 36.8
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 1.3e-14 84.0 79 50.6
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.5e-13 80.5 82 51.2
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 3.2e-13 79.3 66 54.5
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 3.2e-13 79.3 66 54.5
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 7.2e-13 78.2 80 48.8
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 9.4e-13 77.8 69 52.2
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 1.8e-11 73.6 92 45.7
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 4.0e-11 72.4 82 47.6
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 4.0e-11 72.4 66 56.1
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 4.0e-11 72.4 77 45.5
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 3.7e-09 65.9 90 46.7


User provided reference genes

Program Settings