Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 0.0e+00 1220.3 623 100.0
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 0.0e+00 1170.6 622 95.8
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 0.0e+00 1103.6 623 91.2
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 0.0e+00 1092.4 623 90.4
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 6.4e-311 1070.1 624 88.0
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 4.2e-310 1067.4 625 87.5
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 3.9e-308 1060.8 624 87.5
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.7e-303 1045.4 623 85.9
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.7e-303 1045.4 623 85.9
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.1e-302 1042.7 578 92.9
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 2.0e-296 1021.9 624 84.1
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 1.3e-295 1019.2 624 84.1
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 3.8e-295 1017.7 624 83.5
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 8.5e-295 1016.5 624 83.8
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 1.5e-294 1015.8 624 83.8
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.9e-294 1015.4 623 83.1
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.9e-294 1015.4 623 82.8
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.9e-294 1015.4 624 84.1
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 7.2e-294 1013.4 625 86.2
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 3.6e-293 1011.1 624 83.3
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 8.8e-292 1006.5 624 83.2
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.5e-291 1005.7 630 81.6
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 7.5e-291 1003.4 623 83.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 7.5e-291 1003.4 623 82.7
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.1e-289 998.0 634 80.8
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 2.0e-288 995.3 623 82.2
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 5.9e-288 993.8 624 81.9
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 7.7e-288 993.4 620 82.3
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 2.9e-287 991.5 623 81.9
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 6.5e-287 990.3 624 81.7
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.2e-286 987.6 624 81.9
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 3.0e-284 981.5 623 81.1
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.5e-283 979.2 624 81.1
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 5.7e-283 977.2 620 80.2
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 2.2e-282 975.3 647 78.8
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 2.8e-282 974.9 622 81.0
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 6.3e-282 973.8 623 81.1
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.1e-281 971.5 623 80.4
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.7e-280 968.4 623 79.6
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.3e-278 961.4 623 78.7
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 9.5e-278 959.9 622 78.5
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 3.6e-277 958.0 690 74.5
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 3.6e-277 958.0 624 79.2
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 3.6e-277 958.0 624 79.6
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.3e-274 949.5 624 78.2
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.1e-273 946.4 623 77.4
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 9.2e-273 943.3 662 74.9
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.0e-271 939.9 623 77.2
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.6e-269 932.6 625 78.4
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 8.0e-269 930.2 619 75.9
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.0e-268 929.9 619 75.8
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 7.5e-267 923.7 624 76.0
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 1.7e-266 922.5 622 75.9
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.2e-266 922.2 759 67.2
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 4.9e-266 921.0 622 75.7
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.4e-265 919.5 622 75.4
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 4.1e-265 917.9 622 75.2
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 9.2e-265 916.8 622 74.9
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.0e-264 915.6 616 75.6
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.7e-264 915.2 622 74.9
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.7e-263 912.5 622 75.1
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.7e-263 912.5 622 75.1
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.5e-262 909.4 623 74.6
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 4.3e-262 907.9 650 72.6
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 4.0e-260 901.4 615 74.5
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.2e-259 899.8 653 71.7
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.4e-259 897.9 635 72.9
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 3.7e-258 894.8 623 73.2
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 6.4e-258 894.0 622 74.4
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.1e-257 893.3 623 74.0
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.4e-257 892.1 624 74.0
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.0e-255 886.7 620 73.9
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.2e-253 879.8 620 72.4
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.7e-253 877.9 620 73.7
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 4.7e-253 877.9 620 72.1
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.1e-252 876.7 547 81.5
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 4.4e-251 871.3 622 70.6
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 2.8e-245 852.0 580 75.2
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.4e-244 849.7 620 71.0
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 3.1e-244 848.6 623 70.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 2.0e-243 845.9 588 74.5
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 5.8e-243 844.3 522 81.2
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 5.8e-243 844.3 622 70.6
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.5e-240 835.1 639 69.3
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 4.6e-240 834.7 605 70.6
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.0e-239 832.0 522 81.0
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.9e-239 831.6 623 70.1
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 3.9e-239 831.6 621 68.9
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 4.3e-238 828.2 607 70.0
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 5.6e-238 827.8 645 68.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 4.2e-233 811.6 513 81.9
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 2.4e-228 795.8 622 68.3
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 6.4e-226 787.7 622 65.4
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 2.1e-216 756.1 446 86.3
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.7e-210 736.5 621 59.1
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.7e-207 724.2 563 68.6
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.4e-204 716.8 568 69.0
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.2e-202 709.5 625 57.9
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.9e-202 709.1 474 75.9
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 6.1e-192 674.9 620 56.5
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 2.2e-181 639.8 655 51.5
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 3.1e-172 609.4 364 86.3
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.5e-161 573.9 391 78.5
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.9e-161 573.5 342 88.0
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 4.0e-159 565.8 489 66.5
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 2.3e-154 550.1 360 79.7
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 6.6e-154 548.5 622 48.1
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.5e-150 537.3 621 46.5
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 1.0e-130 471.5 370 66.5
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.0e-122 444.9 599 45.2
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 9.9e-118 428.3 511 44.4
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.1e-111 406.8 282 77.7
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 6.9e-111 405.6 374 62.3
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.9e-100 370.9 457 51.6
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.5e-68 264.2 181 74.0
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.6e-67 261.5 177 75.7
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.2e-64 251.1 152 84.9
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 8.5e-61 239.2 144 84.0
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.2e-60 236.1 134 88.8
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 7.2e-60 236.1 188 61.2
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.5e-54 216.9 180 68.3
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.0e-45 189.1 105 94.3
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.5e-44 185.3 122 75.4
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 2.1e-43 181.4 156 62.2
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 8.9e-42 176.0 124 71.8
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.6e-41 174.5 135 65.9
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 2.3e-37 161.4 113 69.0
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.9e-36 158.3 107 71.0
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 7.3e-36 156.4 100 85.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 9.2e-31 139.4 74 97.3
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 2.0e-30 138.3 86 83.7
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.9e-23 115.2 112 49.1
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.2e-23 114.4 84 73.8
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.9e-20 105.1 62 77.4
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.5e-20 104.8 76 69.7
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 5.6e-20 103.6 54 90.7
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 5.6e-20 103.6 63 76.2
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 5.6e-20 103.6 63 76.2
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.2e-19 102.4 119 54.6
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 8.1e-19 99.8 63 69.8
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 8.1e-19 99.8 63 69.8
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.4e-18 99.0 51 80.4
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 5.2e-18 97.1 50 90.0
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.9e-12 78.6 43 81.4
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 4.7e-11 73.9 60 55.0
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 5.8e-09 67.0 38 76.3
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 7.6e-09 66.6 80 48.8
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.1e-07 62.8 70 55.7
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 3.5e-06 57.8 43 67.4


User provided reference genes

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