Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29697 Trifolium pratense HOM05D003109 ORTHO05D003578 2.5e-147 525.4 263 100.0
TPR.G13418 Trifolium pratense HOM05D008118 ORTHO05D411863 1.1e-62 244.2 150 84.0
TPR.G15860 Trifolium pratense HOM05D000307 ORTHO05D000166 1.3e-26 124.4 74 83.8
TPR.G26578 Trifolium pratense HOM05D003109 ORTHO05D003578 6.6e-23 112.1 57 89.5
Ca_01981_v3 Cicer arietinum L. HOM05D003109 ORTHO05D003578 6.2e-21 105.5 58 86.2
Medtr2g035480 Medicago truncatula HOM05D003109 ORTHO05D003578 1.4e-20 104.4 58 82.8
Psat1g150920 Pisum sativum HOM05D003109 ORTHO05D003578 3.4e-19 99.8 57 75.4
Glyma.09G049900 Glycine max HOM05D003109 ORTHO05D003578 1.7e-18 97.4 56 78.6
VMungo1309G0023 Vigna mungo HOM05D003109 ORTHO05D003578 3.8e-18 96.3 56 76.8
Medtr2g035470 Medicago truncatula HOM05D003109 ORTHO05D003578 4.2e-17 92.8 60 71.7
Phvul.009G243300 Phaseolus vulgaris HOM05D003109 ORTHO05D003578 4.2e-17 92.8 55 76.4
Medtr2g035460 Medicago truncatula HOM05D003109 ORTHO05D003578 2.7e-16 90.1 58 69.0
Glyma.09G050100 Glycine max HOM05D003109 ORTHO05D003578 5.1e-15 85.9 59 62.7
Lj6g0023516 Lotus japonicus HOM05D003109 ORTHO05D003578 6.7e-15 85.5 56 71.4
Lalb_Chr20g0114331 Lupinus albus HOM05D003109 ORTHO05D003578 2.5e-14 83.6 57 61.4
VMungo1309G1953 Vigna mungo HOM05D003109 ORTHO05D003578 5.6e-14 82.4 58 60.3
Phvul.009G243200 Phaseolus vulgaris HOM05D003109 ORTHO05D003578 1.3e-13 81.3 58 60.3
arahy.Tifrunner.gnm1.ann1.D1QZC1 Arachis hypogaea HOM05D003109 ORTHO05D003578 8.1e-13 78.6 55 61.8
arahy.Tifrunner.gnm1.ann1.4IPC1A Arachis hypogaea HOM05D003109 ORTHO05D003578 1.1e-12 78.2 55 61.8
THA.LOC104811863 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 9.0e-12 75.1 56 55.4
Sabra03G0112100 Salix brachista HOM05D003109 ORTHO05D003578 1.5e-11 74.3 56 57.1
TWI38G1552 Tripterygium wilfordii HOM05D003109 ORTHO05D003578 1.5e-11 74.3 57 56.1
Potri.003G154900 Populus trichocarpa HOM05D003109 ORTHO05D003578 2.0e-11 73.9 56 57.1
Lj6g0002854 Lotus japonicus HOM05D003109 ORTHO05D003578 4.5e-11 72.8 57 59.6
Sp2g09530 Schrenkiella parvula HOM05D003109 ORTHO05D003578 5.8e-11 72.4 58 55.2
Thhalv10001183m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 1.3e-10 71.2 74 44.6
BcaC06g34519 Brassica carinata HOM05D003109 ORTHO05D003578 1.7e-10 70.9 57 56.1
C07p27620 Brassica napus HOM05D003109 ORTHO05D003578 1.7e-10 70.9 57 56.1
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 1.7e-10 70.9 57 56.1
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 2.9e-10 70.1 54 59.3
AT5G44720 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 3.8e-10 69.7 58 53.4
CAN.G809.44 Capsicum annuum HOM05D003109 ORTHO05D003578 3.8e-10 69.7 56 60.7
Thhalv10000970m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 3.8e-10 69.7 57 54.4
AL8G14810 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 4.9e-10 69.3 57 54.4
A06p46990 Brassica napus HOM05D003109 ORTHO05D003578 4.9e-10 69.3 57 54.4
BraA06t27571Z Brassica rapa HOM05D003109 ORTHO05D003578 4.9e-10 69.3 57 54.4
Sopen02g026500 Solanum pennellii HOM05D003109 ORTHO05D003578 6.4e-10 68.9 56 58.9
PGSC0003DMG400007330 Solanum tuberosum HOM05D003109 ORTHO05D003578 6.4e-10 68.9 56 58.9
Thecc.09G141000 Theobroma cacao HOM05D003109 ORTHO05D003578 6.4e-10 68.9 56 58.9
CARHR178180 Cardamine hirsuta HOM05D003109 ORTHO05D003578 8.4e-10 68.6 64 53.1
RcHm_v2.0_Chr4g0419251 Rosa chinensis HOM05D003109 ORTHO05D003578 8.4e-10 68.6 56 58.9
Cpa.g.sc30.95 Carica papaya HOM05D003109 ORTHO05D003578 1.1e-09 68.2 56 51.8
Nitab4.5_0011308g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 1.1e-09 68.2 56 58.9
Peaxi162Scf00036g01013 Petunia axillaris HOM05D003109 ORTHO05D003578 1.4e-09 67.8 56 58.9
Solyc02g081880.3 Solanum lycopersicum HOM05D003109 ORTHO05D003578 1.9e-09 67.4 56 57.1
Carub.0008s0354 Capsella rubella HOM05D003109 ORTHO05D003578 2.4e-09 67.0 50 60.0
Ciclev10016075m.g Citrus clementina HOM05D003109 ORTHO05D003578 2.4e-09 67.0 55 52.7
Prupe.1G101100 Prunus persica HOM05D003109 ORTHO05D003578 2.4e-09 67.0 57 54.4
CSS0007059 Camellia sinensis var. sinensis HOM05D003109 ORTHO05D003578 3.2e-09 66.6 46 67.4
QL10p022110 Quercus lobata HOM05D003109 ORTHO05D003578 3.2e-09 66.6 56 55.4
Aa31LG6G12320 Aethionema arabicum HOM05D000969 ORTHO05D000899 4.2e-09 66.2 63 49.2
Aa31sc456G20 Aethionema arabicum HOM05D003109 ORTHO05D003578 4.2e-09 66.2 80 42.5
CANSAT35G0308 Cannabis sativa HOM05D003109 ORTHO05D003578 4.2e-09 66.2 55 52.7
Haze_05250 Corylus avellana HOM05D003109 ORTHO05D003578 4.2e-09 66.2 60 51.7
BcaC06g31591 Brassica carinata HOM05D003109 ORTHO05D003578 5.5e-09 65.9 64 51.6
Os09g0560700 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 5.5e-09 65.9 56 60.7
unitig_748.g7553 Utricularia gibba HOM05D003109 ORTHO05D003578 5.5e-09 65.9 56 60.7
RcHm_v2.0_Chr5g0021291 Rosa chinensis HOM05D003109 ORTHO05D003578 7.1e-09 65.5 52 61.5
Sp2g09560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 7.1e-09 65.5 79 41.8
Sopen01g018350 Solanum pennellii HOM05D003109 ORTHO05D003578 7.1e-09 65.5 61 52.5
CARHR030480 Cardamine hirsuta HOM05D003109 ORTHO05D003578 9.3e-09 65.1 60 51.7
ClCG01G025830 Citrullus lanatus HOM05D003109 ORTHO05D003578 9.3e-09 65.1 56 51.8
BraA09t37733Z Brassica rapa HOM05D003109 ORTHO05D003578 1.2e-08 64.7 57 50.9
PGSC0003DMG400015860 Solanum tuberosum HOM05D003109 ORTHO05D003578 1.2e-08 64.7 50 56.0
Carub.0001s2928 Capsella rubella HOM05D003109 ORTHO05D003578 1.6e-08 64.3 60 51.7
Cfa001141 Carpinus fangiana HOM05D003109 ORTHO05D003578 1.6e-08 64.3 56 55.4
BcaB07g30929 Brassica carinata HOM05D003109 ORTHO05D003578 2.1e-08 63.9 57 50.9
Nitab4.5_0000844g0340 Nicotiana tabacum HOM05D003109 ORTHO05D003578 2.1e-08 63.9 56 57.1
Peaxi162Scf00273g01119 Petunia axillaris HOM05D003109 ORTHO05D003578 2.1e-08 63.9 61 52.5
CAN.G97.16 Capsicum annuum HOM05D003109 ORTHO05D003578 2.7e-08 63.5 50 56.0
Duzib187G1888 Durio zibethinus HOM05D003109 ORTHO05D003578 2.7e-08 63.5 56 53.6
Gohir.D05G012500 Gossypium hirsutum HOM05D003109 ORTHO05D003578 2.7e-08 63.5 46 63.0
Gorai.N022400 Gossypium raimondii HOM05D003109 ORTHO05D003578 2.7e-08 63.5 46 63.0
RcHm_v2.0_Chr5g0021311 Rosa chinensis HOM05D003109 ORTHO05D003578 2.7e-08 63.5 56 55.4
Zm00001eb104730 Zea mays HOM05D003109 ORTHO05D003578 2.7e-08 63.5 46 65.2
Atru.chr10.286 Acer truncatum HOM05D003109 ORTHO05D003578 3.5e-08 63.2 57 50.9
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 3.5e-08 63.2 56 53.6
Sp6g07560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 3.5e-08 63.2 63 49.2
Aqoxy4G00011 Aquilegia oxysepala HOM05D003109 ORTHO05D003578 4.6e-08 62.8 56 53.6
BcaB07g30928 Brassica carinata HOM05D003109 ORTHO05D003578 4.6e-08 62.8 59 47.5
Gohir.D05G012300 Gossypium hirsutum HOM05D003109 ORTHO05D003578 4.6e-08 62.8 46 60.9
SGA_v2.0_scaffold341G49369 Striga asiatica HOM05D003109 ORTHO05D003578 4.6e-08 62.8 77 46.8
BraA09t37734Z Brassica rapa HOM05D003109 ORTHO05D003578 6.0e-08 62.4 85 38.8
BraA09t38464Z Brassica rapa HOM05D003109 ORTHO05D003578 6.0e-08 62.4 74 43.2
Gohir.A05G011600 Gossypium hirsutum HOM05D003109 ORTHO05D003578 6.0e-08 62.4 46 60.9
Lsat_1_v5_gn_5_150720 Lactuca sativa HOM05D003109 ORTHO05D003578 6.0e-08 62.4 80 45.0
Manes.03G071100 Manihot esculenta HOM05D003109 ORTHO05D003578 6.0e-08 62.4 57 45.6
BcaC04g21820 Brassica carinata HOM05D003109 ORTHO05D003578 7.9e-08 62.0 57 49.1
BolC9t55590H Brassica oleracea HOM05D003109 ORTHO05D003578 7.9e-08 62.0 57 49.1
CsaV3_6G053040 Cucumis sativus L. HOM05D003109 ORTHO05D003578 7.9e-08 62.0 56 51.8
Dinv26304 Davidia involucrata HOM05D003109 ORTHO05D003578 7.9e-08 62.0 122 36.1
Dinv26326 Davidia involucrata HOM05D003109 ORTHO05D003578 7.9e-08 62.0 122 36.1
Thhalv10011673m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 7.9e-08 62.0 60 46.7
AL1G45200 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 1.0e-07 61.6 47 59.6
MELO3C007005.2 Cucumis melo HOM05D003109 ORTHO05D003578 1.0e-07 61.6 222 26.6
Lj1A1150T110 Lonicera japonica HOM05D003109 ORTHO05D003578 1.0e-07 61.6 57 57.9
THA.LOC104798569 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 1.0e-07 61.6 47 59.6
MSTRG.14821 Avicennia marina HOM05D003109 ORTHO05D003578 1.3e-07 61.2 57 57.9
BcaB01g01432 Brassica carinata HOM05D003109 ORTHO05D003578 1.3e-07 61.2 129 34.9
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.3e-07 61.2 85 38.8
BcaC04g21819 Brassica carinata HOM05D003109 ORTHO05D003578 1.8e-07 60.8 95 33.7
C09p27070 Brassica napus HOM05D003109 ORTHO05D003578 1.8e-07 60.8 95 33.7
BolC9t55591H Brassica oleracea HOM05D003109 ORTHO05D003578 1.8e-07 60.8 95 33.7
Gorai.009G012600 Gossypium raimondii HOM05D003109 ORTHO05D003578 1.8e-07 60.8 112 35.7
MBI18_g01517_MAGBIO Magnolia biondii HOM05D003109 ORTHO05D003578 1.8e-07 60.8 46 60.9
A09p29000 Brassica napus HOM05D003109 ORTHO05D003578 2.3e-07 60.5 47 55.3
Atru.chr10.654 Acer truncatum HOM05D003109 ORTHO05D003578 3.0e-07 60.1 57 49.1
Nn7g38363 Nelumbo nucifera HOM05D003109 ORTHO05D003578 3.0e-07 60.1 60 48.3
CiPaw.10G105800 Carya illinoinensis HOM05D003109 ORTHO05D003578 3.9e-07 59.7 56 53.6
ECA248G0390 Erigeron canadensis HOM05D003109 ORTHO05D003578 3.9e-07 59.7 99 34.3
Hma1.2p1_0185F.1_g081450 Hydrangea macrophylla HOM05D003109 ORTHO05D003578 3.9e-07 59.7 82 41.5
GSVIVG01012158001 Vitis vinifera HOM05D003109 ORTHO05D003578 3.9e-07 59.7 56 53.6
AT1G30910 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 5.1e-07 59.3 47 57.4
Migut.K00496 Erythranthe guttata HOM05D003109 ORTHO05D003578 5.1e-07 59.3 47 63.8
PGR042G1455 Punica granatum HOM05D003109 ORTHO05D003578 5.1e-07 59.3 56 50.0
Os09g0560800 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 6.7e-07 58.9 46 58.7
Migut.M02018 Erythranthe guttata HOM05D003109 ORTHO05D003578 8.7e-07 58.5 93 38.7
HanXRQChr01g0006281 Helianthus annuus HOM05D003109 ORTHO05D003578 8.7e-07 58.5 175 27.4
Nitab4.5_0001499g0020 Nicotiana tabacum HOM05D003109 ORTHO05D003578 8.7e-07 58.5 49 53.1
Nitab4.5_0004630g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 8.7e-07 58.5 49 53.1
Cc09_g05010 Coffea canephora HOM05D003109 ORTHO05D003578 1.1e-06 58.2 106 36.8
DCAR_003753 Daucus carota HOM05D003109 ORTHO05D003578 1.1e-06 58.2 59 47.5
MD10G1226500 Malus domestica HOM05D003109 ORTHO05D003578 1.1e-06 58.2 46 58.7
Atru.chr10.290 Acer truncatum HOM05D003109 ORTHO05D003578 1.5e-06 57.8 57 47.4
RcHm_v2.0_Chr5g0021271 Rosa chinensis HOM05D003109 ORTHO05D003578 1.5e-06 57.8 49 53.1
FvH4_3g13081 Fragaria vesca HOM05D003109 ORTHO05D003578 1.9e-06 57.4 56 51.8
FAN11G2415 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.9e-06 57.4 56 51.8
PSO675G6279 Papaver somniferum HOM05D003109 ORTHO05D003578 1.9e-06 57.4 57 56.1
Actinidia33648 Actinidia chinensis HOM05D003109 ORTHO05D003578 2.5e-06 57.0 60 46.7
BcaC04g20996 Brassica carinata HOM05D003109 ORTHO05D003578 3.3e-06 56.6 46 56.5
C09p36850 Brassica napus HOM05D003109 ORTHO05D003578 3.3e-06 56.6 46 56.5
BolC9t56516H Brassica oleracea HOM05D003109 ORTHO05D003578 3.3e-06 56.6 46 56.5
FAN11G0200 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.3e-06 56.6 49 51.0
FAN21G3259 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.3e-06 56.6 49 51.0
PGR042G3123 Punica granatum HOM05D003109 ORTHO05D003578 3.3e-06 56.6 56 48.2
SalBow8G1655 Salvia bowleyana HOM05D003109 ORTHO05D003578 3.3e-06 56.6 50 54.0
TWI39G0775 Tripterygium wilfordii HOM05D000014 ORTHO05D000093 3.3e-06 56.6 96 38.5
EL10Ac7g17661 Beta vulgaris HOM05D003109 ORTHO05D003578 4.3e-06 56.2 67 44.8
TWI23G1083 Tripterygium wilfordii HOM05D000014 ORTHO05D000016 4.3e-06 56.2 81 42.0
Ciclev10016066m.g Citrus clementina HOM05D003109 ORTHO05D003578 5.6e-06 55.8 46 50.0
Sed0014929 Sechium edule HOM05D003109 ORTHO05D003578 5.6e-06 55.8 56 50.0
TAR627G0606 Trochodendron aralioides HOM05D003109 ORTHO05D003578 5.6e-06 55.8 46 58.7
vmacro03561 Vaccinium macrocarpon HOM05D003109 ORTHO05D003578 7.4e-06 55.5 58 56.9
Cc09_g04980 Coffea canephora HOM05D003109 ORTHO05D003578 9.6e-06 55.1 56 53.6
Sc17g0004290 Simmondsia chinensis HOM05D003109 ORTHO05D003578 9.6e-06 55.1 64 43.8
TWI56G1009 Tripterygium wilfordii HOM05D000014 ORTHO05D000093 9.6e-06 55.1 81 40.7


User provided reference genes

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