Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29693 Trifolium pratense HOM05D006470 ORTHO05D007978 3.4e-122 441.8 244 100.0
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 6.7e-54 214.9 154 68.2
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 1.5e-53 213.8 148 71.6
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 5.7e-45 185.3 141 63.8
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 4.8e-44 182.2 156 59.6
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 5.9e-42 175.3 151 60.9
Oeu039680.1 Olea europaea HOM05D006470 ORTHO05D007978 2.5e-40 169.9 194 47.9
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 4.2e-40 169.1 131 68.7
Hma1.2p1_0273F.1_g109440 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 1.0e-38 164.5 194 48.5
Thecc.01G254400 Theobroma cacao HOM05D006470 ORTHO05D007978 1.8e-38 163.7 144 59.0
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 2.3e-38 163.3 151 56.3
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 2.3e-38 163.3 168 55.4
Nn1g02880 Nelumbo nucifera HOM05D006470 ORTHO05D007978 2.6e-37 159.8 122 61.5
Peaxi162Scf00415g00003 Petunia axillaris HOM05D006470 ORTHO05D007978 4.4e-37 159.1 144 55.6
FAN24G3268 Fragaria x ananassa HOM05D006470 ORTHO05D007978 9.8e-37 157.9 118 61.0
QL09p040137 Quercus lobata HOM05D006470 ORTHO05D007978 2.2e-36 156.8 192 54.7
Nitab4.5_0001945g0030 Nicotiana tabacum HOM05D006470 ORTHO05D007978 1.1e-35 154.5 121 61.2
Hma1.2p1_0576F.1_g181850 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 2.4e-35 153.3 248 47.2
FvH4_2g21070 Fragaria vesca HOM05D006470 ORTHO05D007978 9.2e-35 151.4 118 58.5
COL.COLO4_04011 Corchorus olitorius HOM05D006470 ORTHO05D007978 1.2e-34 151.0 144 55.6
Manes.12G034500 Manihot esculenta HOM05D006470 ORTHO05D007978 1.7e-33 147.1 158 48.1
Sp7g26550 Schrenkiella parvula HOM05D006470 ORTHO05D007978 2.9e-33 146.4 125 58.4
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 3.3e-32 142.9 118 55.1
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 5.6e-32 142.1 144 54.2
Manes.13G036500 Manihot esculenta HOM05D006470 ORTHO05D007978 5.6e-32 142.1 146 51.4
Duzib133G1499 Durio zibethinus HOM05D006470 ORTHO05D007978 1.6e-31 140.6 127 57.5
AL7G23980 Arabidopsis lyrata HOM05D006470 ORTHO05D007978 2.8e-31 139.8 120 56.7
Gohir.D07G156600 Gossypium hirsutum HOM05D006470 ORTHO05D007978 3.6e-31 139.4 127 54.3
Dinv22382 Davidia involucrata HOM05D006470 ORTHO05D007978 6.1e-31 138.7 122 55.7
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 8.0e-31 138.3 121 56.2
Nitab4.5_0003295g0060 Nicotiana tabacum HOM05D006470 ORTHO05D007978 1.0e-30 137.9 144 51.4
EL10Ac7g17624 Beta vulgaris HOM05D006470 ORTHO05D007978 1.4e-30 137.5 149 50.3
Gorai.001G179700 Gossypium raimondii HOM05D006470 ORTHO05D007978 1.8e-30 137.1 127 54.3
MBI10_g13794_MAGBIO Magnolia biondii HOM05D006470 ORTHO05D007978 5.2e-30 135.6 174 46.0
Solyc09g072630.3 Solanum lycopersicum HOM05D006470 ORTHO05D007978 6.8e-30 135.2 122 54.1
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 8.9e-30 134.8 187 42.8
Nn3g19710 Nelumbo nucifera HOM05D006470 ORTHO05D007978 8.9e-30 134.8 138 48.6
Lsat_1_v5_gn_9_10681 Lactuca sativa HOM05D006470 ORTHO05D007978 1.2e-29 134.4 183 44.8
Thhalv10027034m.g Eutrema salsugineum HOM05D006470 ORTHO05D007978 2.0e-29 133.7 124 54.8
FAN15G1173 Fragaria x ananassa HOM05D006470 ORTHO05D007978 2.6e-29 133.3 119 52.9
Atru.BG.79.p Acer truncatum HOM05D006470 ORTHO05D007978 1.7e-28 130.6 122 53.3
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 1.7e-28 130.6 141 51.1
SHI26693 Sapria himalayana HOM05D006470 ORTHO05D007978 2.9e-28 129.8 126 51.6
MD10G1180100 Malus domestica HOM05D006470 ORTHO05D007978 6.4e-28 128.6 122 53.3
Psat6g062240 Pisum sativum HOM05D006470 ORTHO05D007978 8.3e-28 128.3 145 50.3
TWI12G0101 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 1.4e-27 127.5 86 69.8
FAN20G2495 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.9e-27 127.1 119 51.3
FAN27G1109 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.9e-27 127.1 119 51.3
Psat6g063200 Pisum sativum HOM05D006470 ORTHO05D007978 3.2e-27 126.3 128 54.7
Potri.005G227600 Populus trichocarpa HOM05D006470 ORTHO05D007978 4.1e-27 125.9 154 49.4
AT4G28560 Arabidopsis thaliana HOM05D006470 ORTHO05D007978 5.4e-27 125.6 120 53.3
BcaNung04289 Brassica carinata HOM05D006470 ORTHO05D007978 7.0e-27 125.2 154 45.5
Aa31LG2G21810 Aethionema arabicum HOM05D006470 ORTHO05D007978 9.2e-27 124.8 173 42.2
RcHm_v2.0_Chr6g0287531 Rosa chinensis HOM05D006470 ORTHO05D007978 9.2e-27 124.8 119 52.1
C01p10920 Brassica napus HOM05D006470 ORTHO05D007978 3.9e-25 119.4 125 52.8
BcaNung04688 Brassica carinata HOM05D006470 ORTHO05D007978 5.0e-25 119.0 220 37.3
A01p09340 Brassica napus HOM05D006470 ORTHO05D007978 1.9e-24 117.1 124 50.8
BraA01t00881Z Brassica rapa HOM05D006470 ORTHO05D007978 1.9e-24 117.1 124 50.8
CARHR236350 Cardamine hirsuta HOM05D006470 ORTHO05D007978 1.9e-24 117.1 120 50.0
FAN27G1256 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.9e-24 117.1 111 51.4
BcaC09g51655 Brassica carinata HOM05D006470 ORTHO05D007978 4.3e-24 115.9 125 51.2
BolC1t01056H Brassica oleracea HOM05D006470 ORTHO05D007978 4.3e-24 115.9 125 51.2
SGA_v2.0_scaffold1G00631 Striga asiatica HOM05D006470 ORTHO05D007978 7.3e-24 115.2 182 48.4
Rhsim13G0037300 Rhododendron simsii HOM05D006470 ORTHO05D007978 1.1e-22 111.3 176 40.3
Sabra05G0175600 Salix brachista HOM05D006470 ORTHO05D007978 1.4e-22 110.9 83 65.1
Aqoxy5G00193 Aquilegia oxysepala HOM05D006470 ORTHO05D007978 5.8e-21 105.5 123 44.7
HanXRQChr10g0280761 Helianthus annuus HOM05D006470 ORTHO05D007978 9.8e-21 104.8 180 36.7
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 1.3e-20 104.4 194 43.3
Lj2P1147T22 Lonicera japonica HOM05D006470 ORTHO05D007978 1.7e-20 104.0 144 42.4
Sc05g0003180 Simmondsia chinensis HOM05D006470 ORTHO05D007978 2.9e-20 103.2 93 53.8
PSO210G2696 Papaver somniferum HOM05D006470 ORTHO05D007978 1.7e-17 94.0 172 33.1
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 1.9e-16 90.5 88 48.9
PSO832G0066 Papaver somniferum HOM05D006470 ORTHO05D007978 4.3e-16 89.4 118 39.0
AUR62008754 Chenopodium quinoa HOM05D006470 ORTHO05D007978 7.3e-16 88.6 88 47.7
Oeu052037.1 Olea europaea HOM05D006470 ORTHO05D007978 7.3e-16 88.6 98 46.9
Actinidia37529 Actinidia chinensis HOM05D006470 ORTHO05D007978 9.5e-16 88.2 182 32.4
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 3.4e-13 79.7 137 46.7
CSS0034739 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 1.3e-12 77.8 175 31.4
C07p34540 Brassica napus HOM05D003233 ORTHO05D003694 4.1e-11 72.8 108 40.7
BolC7t43985H Brassica oleracea HOM05D003233 ORTHO05D003694 4.1e-11 72.8 108 40.7
CSS0011402 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 1.6e-10 70.9 138 34.8
Thhalv10004133m.g Eutrema salsugineum HOM05D003233 ORTHO05D003694 1.6e-10 70.9 109 42.2
BcaC06g33970 Brassica carinata HOM05D003233 ORTHO05D003694 3.5e-10 69.7 111 40.5
BolC5t29758H Brassica oleracea HOM05D003233 ORTHO05D003694 1.3e-09 67.8 107 40.2
AT3G25670 Arabidopsis thaliana HOM05D003233 ORTHO05D003694 1.7e-09 67.4 94 41.5
BcaC06g31126 Brassica carinata HOM05D003233 ORTHO05D003694 1.7e-09 67.4 152 34.2
Carub.0005s0349 Capsella rubella HOM05D003233 ORTHO05D003694 1.7e-09 67.4 111 38.7
AL5G14210 Arabidopsis lyrata HOM05D003233 ORTHO05D003694 2.3e-09 67.0 94 42.6
A06p42610 Brassica napus HOM05D003233 ORTHO05D003694 3.9e-09 66.2 111 39.6
BraA06t27176Z Brassica rapa HOM05D003233 ORTHO05D003694 3.9e-09 66.2 111 39.6
Sp2g14930 Schrenkiella parvula HOM05D003233 ORTHO05D003694 5.1e-09 65.9 94 41.5
CARHR013610 Cardamine hirsuta HOM05D003233 ORTHO05D003694 6.6e-09 65.5 95 42.1
CARHR288530 Cardamine hirsuta HOM05D003233 ORTHO05D003694 1.1e-08 64.7 94 41.5
Atru.chr2.1091 Acer truncatum HOM05D006470 ORTHO05D007978 4.3e-08 62.8 54 55.6
MELO3C009142.2 Cucumis melo HOM05D000053 ORTHO05D000448 9.5e-08 61.6 99 38.4
Gohir.D11G308150 Gossypium hirsutum HOM05D000071 ORTHO05D000029 9.5e-08 61.6 89 33.7
ATR0736G105 Amborella trichopoda HOM05D006470 ORTHO05D007978 1.2e-07 61.2 97 33.0
FAN11G1904 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.6e-07 60.8 141 31.2
Prupe.4G232400 Prunus persica HOM05D000053 ORTHO05D000035 1.6e-07 60.8 156 32.1
C05p10120 Brassica napus HOM05D003233 ORTHO05D003694 2.1e-07 60.5 107 39.3
CAN.G525.63 Capsicum annuum HOM05D000021 ORTHO05D000010 3.6e-07 59.7 133 47.4
Gorai.007G339000 Gossypium raimondii HOM05D000071 ORTHO05D000029 3.6e-07 59.7 89 32.6
Phvul.003G025400 Phaseolus vulgaris HOM05D003233 ORTHO05D003694 3.6e-07 59.7 116 32.8
Phvul.004G136500 Phaseolus vulgaris HOM05D000029 ORTHO05D001072 3.6e-07 59.7 85 42.4
Dinv16120 Davidia involucrata HOM05D000517 ORTHO05D003374 6.2e-07 58.9 112 36.6
Gohir.A07G150300 Gossypium hirsutum HOM05D006470 ORTHO05D007978 8.1e-07 58.5 95 36.8
Eucgr.C03758 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.1e-06 58.2 155 29.7
Gorai.006G149500 Gossypium raimondii HOM05D000517 ORTHO05D003374 1.1e-06 58.2 104 35.6
Prupe.4G233600 Prunus persica HOM05D000053 ORTHO05D000035 1.1e-06 58.2 156 30.1
Thecc.05G104200 Theobroma cacao HOM05D000517 ORTHO05D003374 1.1e-06 58.2 101 35.6
COL.COLO4_29576 Corchorus olitorius HOM05D000517 ORTHO05D003374 1.4e-06 57.8 103 35.9
Peaxi162Scf00062g00217 Petunia axillaris HOM05D000053 ORTHO05D000035 1.4e-06 57.8 146 30.8
Potri.001G385600 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.4e-06 57.8 127 29.1
Potri.003G025800 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.4e-06 57.8 127 29.1
TAR633G0185 Trochodendron aralioides HOM05D000029 ORTHO05D008567 1.8e-06 57.4 154 29.9
VMungo0331G1986 Vigna mungo HOM05D000311 ORTHO05D000183 1.8e-06 57.4 92 32.6
GSVIVG01028766001 Vitis vinifera HOM05D000071 ORTHO05D000029 1.8e-06 57.4 164 28.7
MSTRG.5895 Avicennia marina HOM05D000517 ORTHO05D003374 2.4e-06 57.0 101 34.7
BraA06t26571Z Brassica rapa HOM05D000029 ORTHO05D001072 2.4e-06 57.0 92 37.0
Carub.0001s1296 Capsella rubella HOM05D003233 ORTHO05D003694 2.4e-06 57.0 94 37.2
FAN16G3241 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.4e-06 57.0 148 31.1
Nn4g23681 Nelumbo nucifera HOM05D003233 ORTHO05D003694 2.4e-06 57.0 93 36.6
Nn4g24646 Nelumbo nucifera HOM05D003233 ORTHO05D003694 2.4e-06 57.0 93 36.6
SalBow7G3001 Salvia bowleyana HOM05D000071 ORTHO05D000029 2.4e-06 57.0 133 30.8
Potri.001G385400 Populus trichocarpa HOM05D000054 ORTHO05D000171 3.1e-06 56.6 127 29.1
Potri.003G026325 Populus trichocarpa HOM05D000054 ORTHO05D000171 3.1e-06 56.6 127 29.1
Atru.chr9.723 Acer truncatum HOM05D003233 ORTHO05D003694 4.0e-06 56.2 113 32.7
VMungo0720G0924 Vigna mungo HOM05D000311 ORTHO05D000183 4.0e-06 56.2 92 30.4
CANSAT25G1450 Cannabis sativa HOM05D001708 ORTHO05D001649 5.2e-06 55.8 157 28.7
Oeu003625.2 Olea europaea HOM05D000517 ORTHO05D000751 5.2e-06 55.8 101 32.7
Sabra10G0026800 Salix brachista HOM05D003705 ORTHO05D010003 5.2e-06 55.8 122 27.9
Sopen06g030490 Solanum pennellii HOM05D000517 ORTHO05D003374 5.2e-06 55.8 127 33.9
THA.LOC104826803 Tarenaya hassleriana HOM05D000517 ORTHO05D003374 5.2e-06 55.8 100 37.0
Ciclev10007379m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.8e-06 55.5 157 29.3
Ciclev10010776m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.8e-06 55.5 157 29.3
FAN05G2065 Fragaria x ananassa HOM05D000094 ORTHO05D002350 6.8e-06 55.5 78 47.4
FAN13G0334 Fragaria x ananassa HOM05D003233 ORTHO05D003694 6.8e-06 55.5 106 34.0
Gorai.007G338400 Gossypium raimondii HOM05D000071 ORTHO05D000029 6.8e-06 55.5 103 35.9
Gorai.009G159500 Gossypium raimondii HOM05D000054 ORTHO05D000171 6.8e-06 55.5 81 39.5
Os01g0917500 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D002388 6.8e-06 55.5 64 39.1
Potri.003G025566 Populus trichocarpa HOM05D000054 ORTHO05D000171 6.8e-06 55.5 127 28.3
CAN.G1726.7 Capsicum annuum HOM05D000517 ORTHO05D003374 8.9e-06 55.1 127 33.1
DCAR_022443 Daucus carota HOM05D002919 ORTHO05D003327 8.9e-06 55.1 135 30.4
FAN16G0359 Fragaria x ananassa HOM05D000071 ORTHO05D000029 8.9e-06 55.1 129 31.8
Gohir.A04G108700 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.9e-06 55.1 163 28.2
Gorai.007G337100 Gossypium raimondii HOM05D000071 ORTHO05D000029 8.9e-06 55.1 95 30.5
Medtr1g088940 Medicago truncatula HOM05D000021 ORTHO05D000010 8.9e-06 55.1 91 35.2
Oeu030965.1 Olea europaea HOM05D000071 ORTHO05D000029 8.9e-06 55.1 193 36.3
Sopen10g032420 Solanum pennellii HOM05D000517 ORTHO05D003374 8.9e-06 55.1 148 29.1
TAR633G0422 Trochodendron aralioides HOM05D000517 ORTHO05D003374 8.9e-06 55.1 113 35.4
VMungo1127G2119 Vigna mungo HOM05D000311 ORTHO05D000183 8.9e-06 55.1 92 32.6


User provided reference genes

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