Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.3e-41 172.6 83 100.0
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.7e-22 107.1 62 85.5
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 4.8e-20 100.9 57 86.0
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 5.3e-19 97.4 60 78.3
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 7.7e-18 93.6 60 76.7
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.7e-17 92.4 62 71.0
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 2.2e-17 92.0 60 75.0
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.2e-17 92.0 62 72.6
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.9e-17 91.7 60 71.7
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 2.9e-17 91.7 62 74.2
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 70.0
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 70.0
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 71.7
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 71.7
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 70.0
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 71.7
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 70.0
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 70.0
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 5.0e-17 90.9 60 71.7
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 5.0e-17 90.9 53 81.1
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 6.5e-17 90.5 50 86.0
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 6.5e-17 90.5 62 71.0
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.5e-16 89.4 60 68.3
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.5e-16 89.4 60 68.3
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 1.5e-16 89.4 62 71.0
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.9e-16 89.0 62 67.7
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 1.9e-16 89.0 60 68.3
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.9e-16 89.0 62 69.4
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 1.9e-16 89.0 60 68.3
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.9e-16 89.0 62 69.4
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 3.2e-16 88.2 62 69.4
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 4.2e-16 87.8 60 68.3
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.2e-16 87.8 53 79.2
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.2e-16 87.8 62 71.0
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.2e-16 87.8 62 71.0
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 4.2e-16 87.8 62 71.0
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 4.2e-16 87.8 55 76.4
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 4.2e-16 87.8 60 71.7
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 4.2e-16 87.8 60 71.7
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 5.5e-16 87.4 60 70.0
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 7.2e-16 87.0 51 80.4
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 7.2e-16 87.0 51 80.4
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 7.2e-16 87.0 51 80.4
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 7.2e-16 87.0 51 80.4
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 9.4e-16 86.7 60 71.7
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 9.4e-16 86.7 60 70.0
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 9.4e-16 86.7 51 78.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 9.4e-16 86.7 51 78.4
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.2e-15 86.3 60 70.0
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.6e-15 85.9 60 70.0
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.6e-15 85.9 55 74.5
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 2.1e-15 85.5 60 70.0
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 2.1e-15 85.5 53 77.4
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.7e-15 85.1 60 65.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 2.7e-15 85.1 62 69.4
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 2.7e-15 85.1 62 67.7
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 2.7e-15 85.1 60 68.3
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 3.6e-15 84.7 60 70.0
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 3.6e-15 84.7 60 68.3
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 4.7e-15 84.3 50 78.0
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 4.7e-15 84.3 60 68.3
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 6.1e-15 84.0 51 74.5
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.0e-14 83.2 51 76.5
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.0e-14 83.2 53 79.2
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.4e-14 82.8 60 68.3
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.4e-14 82.8 60 65.0
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.8e-14 82.4 60 61.7
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 2.3e-14 82.0 60 66.7
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 4.0e-14 81.3 62 61.3
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 4.0e-14 81.3 50 72.0
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 5.2e-14 80.9 62 62.9
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 5.2e-14 80.9 62 62.9
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 6.8e-14 80.5 60 66.7
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 6.8e-14 80.5 60 65.0
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.2e-13 79.7 60 66.7
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.5e-13 79.3 60 66.7
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.5e-13 79.3 60 63.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.0e-13 79.0 60 65.0
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 2.0e-13 79.0 60 61.7
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 2.0e-13 79.0 60 66.7
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 2.0e-13 79.0 60 66.7
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 3.4e-13 78.2 60 63.3
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 4.4e-13 77.8 51 72.5
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.4e-13 77.8 44 81.8
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 9.8e-13 76.6 62 59.7
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 9.8e-13 76.6 60 65.0
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 9.8e-13 76.6 60 60.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 1.3e-12 76.3 60 61.7
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.3e-12 76.3 60 63.3
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 1.7e-12 75.9 60 60.0
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.7e-12 75.9 70 57.1
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 2.2e-12 75.5 60 60.0
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 2.2e-12 75.5 60 61.7
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.8e-12 75.1 60 63.3
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.7e-12 74.7 60 60.0
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 6.3e-12 73.9 60 61.7
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 8.3e-12 73.6 53 62.3
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.1e-11 73.2 49 69.4
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.1e-11 73.2 60 56.7
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.8e-11 72.4 48 66.7
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 1.8e-11 72.4 53 60.4
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 4.1e-11 71.2 60 55.0
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.1e-11 71.2 53 58.5
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 5.4e-11 70.9 55 61.8
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 9.1e-11 70.1 51 62.7
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.6e-10 69.3 60 53.3
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 2.0e-10 68.9 59 55.9
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 2.0e-10 68.9 60 55.0
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.0e-10 68.9 60 56.7
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 2.7e-10 68.6 59 55.9
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 5.9e-10 67.4 51 56.9
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 7.7e-10 67.0 60 60.0
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 7.7e-10 67.0 60 51.7
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.0e-09 66.6 48 64.6
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 2.2e-09 65.5 55 56.4
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 2.2e-09 65.5 51 62.7
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 8.5e-09 63.5 40 70.0
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.5e-08 62.0 65 49.2
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 3.2e-08 61.6 62 46.8
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 5.5e-08 60.8 40 70.0
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 7.2e-08 60.5 45 64.4
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 7.2e-08 60.5 45 64.4
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 7.2e-08 60.5 45 64.4
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.6e-07 58.2 53 52.8
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 6.1e-07 57.4 53 52.8
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 2.3e-06 55.5 53 50.9


User provided reference genes

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