Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.7e-127 458.8 241 100.0
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 4.3e-77 292.0 236 69.5
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.1e-76 289.7 241 66.8
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.2e-73 279.6 241 64.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.4e-72 276.2 251 62.2
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 5.4e-72 275.0 251 62.2
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.7e-70 270.0 255 60.0
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 6.6e-70 268.1 242 62.0
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.3e-68 263.8 242 59.9
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.1e-68 263.1 242 60.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 8.1e-68 261.2 242 59.9
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 2.4e-64 249.6 222 60.8
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 9.3e-64 247.7 224 60.7
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 7.9e-63 244.6 226 59.7
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 3.0e-62 242.7 229 58.5
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 8.7e-62 241.1 226 58.4
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.5e-61 240.4 235 58.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.9e-61 240.0 225 60.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 7.4e-61 238.0 235 56.2
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.6e-60 236.9 240 57.1
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.6e-60 236.9 260 54.2
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 3.6e-60 235.7 225 59.6
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 6.2e-60 235.0 236 56.4
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 8.1e-60 234.6 230 56.1
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.1e-59 234.2 226 55.8
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.4e-59 233.0 239 54.8
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 3.1e-59 232.6 224 58.5
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 3.1e-59 232.6 224 58.0
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 4.0e-59 232.3 228 57.0
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 5.3e-59 231.9 222 57.2
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.3e-59 231.9 231 57.1
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 6.9e-59 231.5 234 55.1
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 6.9e-59 231.5 241 56.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 9.0e-59 231.1 231 56.7
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.2e-58 230.7 247 52.6
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.2e-58 230.7 235 55.3
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.5e-58 230.3 231 56.7
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.5e-58 230.3 222 57.2
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.0e-58 229.9 232 56.0
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.6e-58 229.6 241 55.6
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.4e-58 229.2 231 56.7
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 7.6e-58 228.0 232 55.2
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 7.6e-58 228.0 237 54.4
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.7e-57 226.9 221 56.1
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.7e-57 226.9 219 59.4
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.2e-57 226.5 252 53.2
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.2e-57 226.5 234 56.0
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 2.9e-57 226.1 270 49.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.8e-57 225.7 230 56.5
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 4.9e-57 225.3 231 54.5
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 8.4e-57 224.6 244 52.5
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.1e-56 224.2 233 54.5
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.1e-56 224.2 248 51.6
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.1e-56 224.2 233 55.4
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-56 223.8 235 54.9
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.9e-56 223.4 220 56.8
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.4e-56 223.0 228 55.3
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.5e-56 221.9 260 49.6
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.5e-56 221.9 260 49.6
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 9.3e-56 221.1 271 48.7
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.6e-55 220.3 228 54.8
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.5e-55 219.2 251 52.6
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 3.5e-55 219.2 196 66.3
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.6e-55 218.8 218 56.9
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 4.6e-55 218.8 218 56.4
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 6.0e-55 218.4 236 53.8
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 6.0e-55 218.4 241 53.5
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 6.0e-55 218.4 225 54.2
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 7.9e-55 218.0 236 53.0
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 7.9e-55 218.0 219 53.4
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.0e-54 217.6 240 52.9
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.3e-54 217.2 241 53.1
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.3e-54 217.2 224 54.9
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.8e-54 216.9 237 51.5
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.8e-54 216.9 235 53.6
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-54 216.5 240 52.9
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 6.7e-54 214.9 234 53.0
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 6.7e-54 214.9 223 56.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 8.7e-54 214.5 222 55.0
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 8.7e-54 214.5 232 52.6
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.1e-53 214.2 226 54.9
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.5e-53 213.8 230 54.3
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.9e-53 213.4 220 53.6
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 3.3e-53 212.6 214 54.2
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.3e-53 212.2 219 53.4
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 4.3e-53 212.2 270 46.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 4.3e-53 212.2 241 52.3
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.6e-53 211.8 219 53.0
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 7.4e-53 211.5 214 54.2
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 7.4e-53 211.5 233 54.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.3e-52 210.7 235 52.8
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.6e-52 210.3 214 55.6
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.1e-52 209.9 224 54.0
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.8e-51 206.8 205 57.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 4.0e-51 205.7 224 50.9
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 5.3e-51 205.3 250 51.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.5e-50 203.8 217 53.5
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.5e-50 203.8 227 51.5
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.0e-50 203.4 231 51.5
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 5.8e-50 201.8 231 51.9
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.3e-49 200.7 198 56.6
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.7e-49 200.3 222 51.8
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 3.8e-49 199.1 240 49.6
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-48 197.2 217 53.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.9e-48 196.8 229 52.0
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 9.3e-48 194.5 224 51.3
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.2e-47 194.1 229 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.7e-47 193.0 216 50.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 4.6e-47 192.2 224 47.3
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 7.9e-47 191.4 230 51.3
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 7.9e-47 191.4 232 48.7
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.3e-46 190.7 235 48.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.1e-46 188.7 174 59.2
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.6e-44 183.7 214 49.5
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.7e-44 182.6 235 46.8
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 3.7e-44 182.6 181 55.8
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 4.8e-44 182.2 220 49.1
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.4e-43 179.9 199 54.3
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.4e-42 176.0 214 50.0
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 5.9e-42 175.3 211 46.4
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.2e-40 169.1 204 52.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.3e-40 167.9 184 50.0
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 9.3e-40 167.9 227 47.6
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.1e-39 166.8 220 46.4
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.1e-39 166.8 220 46.4
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.7e-39 166.4 221 46.2
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 7.9e-39 164.9 130 75.4
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.3e-38 164.1 155 54.8
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 6.7e-38 161.8 213 45.5
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 5.7e-37 158.7 147 59.2
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 5.7e-37 158.7 147 59.2
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 5.7e-37 158.7 147 59.2
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.8e-36 155.6 167 50.9
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.4e-35 153.3 206 43.7
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 4.1e-35 152.5 155 50.3
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 6.9e-35 151.8 258 41.1
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.5e-34 150.6 130 56.9
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 5.9e-34 148.7 260 36.5
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.7e-31 139.8 134 53.0
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 4.6e-31 139.0 87 70.1
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.4e-30 137.5 131 54.2
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.6e-29 133.3 104 77.9
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 8.2e-28 128.3 122 57.4
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 5.3e-27 125.6 130 46.9
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 5.3e-27 125.6 205 42.4
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.7e-25 120.6 69 75.4
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 6.5e-25 118.6 115 62.6
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.2e-24 116.3 135 51.9
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 5.5e-24 115.5 234 37.6
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.8e-22 110.5 125 44.8
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.3e-20 104.4 167 44.9
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 3.1e-19 99.8 98 62.2
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.9e-18 95.5 69 59.4
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.2e-17 93.6 64 67.2
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 9.4e-16 88.2 66 53.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 2.7e-15 86.7 52 65.4
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.6e-15 86.3 51 76.5
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.7e-13 79.0 121 47.9
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 3.7e-12 76.3 96 50.0
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.4e-11 74.3 134 38.1
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.8e-11 73.9 49 61.2
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.4e-06 57.8 181 27.1
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.8e-06 55.5 62 50.0


User provided reference genes

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