Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29631 Trifolium pratense HOM05D000170 ORTHO05D411011 5.0e-62 242.3 142 100.0
TPR.G27302 Trifolium pratense HOM05D000170 ORTHO05D007205 2.6e-50 203.4 142 78.2
Medtr2g450870 Medicago truncatula HOM05D000071 ORTHO05D000029 4.3e-21 106.3 122 49.2
Medtr2g055360 Medicago truncatula HOM05D000071 ORTHO05D000029 3.4e-18 96.7 155 39.4
Medtr2g055690 Medicago truncatula HOM05D000071 ORTHO05D000029 2.9e-17 93.6 187 34.8
TPR.G21749 Trifolium pratense HOM05D000071 ORTHO05D000029 2.4e-16 90.5 142 45.1
Psat1g022600 Pisum sativum HOM05D000071 ORTHO05D000029 4.7e-12 76.3 139 43.9
arahy.Tifrunner.gnm1.ann1.RA000W Arachis hypogaea HOM05D000071 ORTHO05D000029 1.2e-10 71.6 172 31.4
Duzib268G0774 Durio zibethinus HOM05D000053 ORTHO05D000035 1.5e-10 71.2 141 35.5
TPR.G16567 Trifolium pratense HOM05D000071 ORTHO05D000029 1.5e-10 71.2 90 48.9
TPR.G14786 Trifolium pratense HOM05D000071 ORTHO05D000029 4.4e-10 69.7 171 43.9
AUR62015956 Chenopodium quinoa HOM05D000071 ORTHO05D000029 9.9e-10 68.6 120 40.8
Lj5g0012313 Lotus japonicus HOM05D000071 ORTHO05D000029 1.7e-09 67.8 121 36.4
Duzib268G1127 Durio zibethinus HOM05D000053 ORTHO05D000035 3.8e-09 66.6 141 34.0
arahy.Tifrunner.gnm1.ann1.W3TKLZ Arachis hypogaea HOM05D000071 ORTHO05D000029 8.4e-09 65.5 126 33.3
Gohir.A04G006900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.4e-09 65.5 140 34.3
Gohir.D05G382000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.4e-09 65.5 140 35.7
Gorai.009G448100 Gossypium raimondii HOM05D000053 ORTHO05D000035 8.4e-09 65.5 140 41.4
MBI19_g35953_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 8.4e-09 65.5 126 34.9
VMungo0720G0171 Vigna mungo HOM05D000071 ORTHO05D000029 1.1e-08 65.1 142 33.1
Gohir.D05G376800 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.9e-08 64.3 140 35.7
Phvul.007G070400 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 2.4e-08 63.9 142 32.4
arahy.Tifrunner.gnm1.ann1.AZ3QQS Arachis hypogaea HOM05D000071 ORTHO05D000029 3.2e-08 63.5 126 33.3
Gohir.D05G375700 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.2e-08 63.5 140 42.9
MD10G1222500 Malus domestica HOM05D000071 ORTHO05D000029 3.2e-08 63.5 148 33.8
Gorai.009G444400 Gossypium raimondii HOM05D000053 ORTHO05D000035 4.2e-08 63.2 140 42.9
MD10G1221600 Malus domestica HOM05D000071 ORTHO05D000029 5.4e-08 62.8 151 33.8
SalBow1G6716 Salvia bowleyana HOM05D000021 ORTHO05D000010 5.4e-08 62.8 151 33.1
Gohir.D05G381900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 7.1e-08 62.4 140 33.6
Gohir.D05G380400 Gossypium hirsutum HOM05D000053 ORTHO05D000035 9.3e-08 62.0 139 43.2
Gorai.009G447900 Gossypium raimondii HOM05D000053 ORTHO05D000035 9.3e-08 62.0 139 43.2
Gohir.A04G007050 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.2e-07 61.6 140 38.6
Gohir.D05G380200 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.2e-07 61.6 140 40.7
MD10G1223100 Malus domestica HOM05D000071 ORTHO05D000029 1.2e-07 61.6 151 33.1
Gorai.009G448200 Gossypium raimondii HOM05D000053 ORTHO05D000035 1.6e-07 61.2 139 43.2
HanXRQChr08g0215151 Helianthus annuus HOM05D000071 ORTHO05D000029 1.6e-07 61.2 138 32.6
Gohir.D05G375800 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.1e-07 60.8 139 44.6
FAN25G1875 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.7e-07 60.5 139 36.7
arahy.Tifrunner.gnm1.ann1.EI0A7C Arachis hypogaea HOM05D000071 ORTHO05D000029 3.5e-07 60.1 57 54.4
arahy.Tifrunner.gnm1.ann1.J1YFQ5 Arachis hypogaea HOM05D000071 ORTHO05D000029 3.5e-07 60.1 57 52.6
Glyma.10G128866 Glycine max HOM05D000071 ORTHO05D000029 6.0e-07 59.3 183 27.9
Gohir.A01G054700 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.0e-07 59.3 143 32.9
Gohir.D05G381301 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.0e-07 59.3 140 41.4
Gohir.D05G376166 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.0e-06 58.5 140 41.4
Lj5g0023156 Lotus japonicus HOM05D000071 ORTHO05D000029 1.0e-06 58.5 116 35.3
Nitab4.5_0008247g0070 Nicotiana tabacum HOM05D000053 ORTHO05D000035 1.0e-06 58.5 141 33.3
VMungo0720G0023 Vigna mungo HOM05D000071 ORTHO05D000029 1.0e-06 58.5 164 30.5
arahy.Tifrunner.gnm1.ann1.7CRM85 Arachis hypogaea HOM05D000071 ORTHO05D000029 1.3e-06 58.2 57 54.4
Gohir.A04G005750 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.3e-06 58.2 140 32.1
Gohir.D05G381000 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.3e-06 58.2 139 42.4
TPR.G20666 Trifolium pratense HOM05D000071 ORTHO05D000029 1.3e-06 58.2 67 46.3
arahy.Tifrunner.gnm1.ann1.02SHUX Arachis hypogaea HOM05D000071 ORTHO05D031618 1.7e-06 57.8 153 31.4
FAN11G1904 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.7e-06 57.8 150 34.0
Gohir.D05G375900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.7e-06 57.8 139 43.2
Thecc.02G306800 Theobroma cacao HOM05D000071 ORTHO05D000029 1.7e-06 57.8 123 33.3
Gohir.A04G006840 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.3e-06 57.4 139 43.2
Gohir.D05G375400 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.3e-06 57.4 139 43.2
HanXRQChr08g0215521 Helianthus annuus HOM05D000071 ORTHO05D000029 2.3e-06 57.4 135 28.1
Gohir.D05G376100 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.0e-06 57.0 140 42.9
arahy.Tifrunner.gnm1.ann1.X0AYPL Arachis hypogaea HOM05D000071 ORTHO05D000029 3.9e-06 56.6 57 49.1
Gohir.D05G381633 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.9e-06 56.6 139 42.4
HanXRQChr03g0066231 Helianthus annuus HOM05D000071 ORTHO05D000029 3.9e-06 56.6 145 29.7
arahy.Tifrunner.gnm1.ann1.B1PTQC Arachis hypogaea HOM05D000071 ORTHO05D000029 5.1e-06 56.2 67 44.8
CAN.G321.44 Capsicum annuum HOM05D000071 ORTHO05D000029 5.1e-06 56.2 138 35.5
HanXRQChr08g0215471 Helianthus annuus HOM05D000071 ORTHO05D000029 5.1e-06 56.2 137 29.9
Lsat_1_v5_gn_5_94020 Lactuca sativa HOM05D000071 ORTHO05D000029 5.1e-06 56.2 129 36.4
FvH4_3g13620 Fragaria vesca HOM05D000071 ORTHO05D000029 6.6e-06 55.8 128 35.9
Gohir.D05G375300 Gossypium hirsutum HOM05D000053 ORTHO05D000035 6.6e-06 55.8 139 41.7
Gohir.A09G181250 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.7e-06 55.5 133 32.3
Gohir.D05G381500 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.7e-06 55.5 139 41.0
HanXRQChr08g0215741 Helianthus annuus HOM05D000071 ORTHO05D000029 8.7e-06 55.5 132 31.8
RcHm_v2.0_Chr5g0029441 Rosa chinensis HOM05D000071 ORTHO05D000029 8.7e-06 55.5 140 34.3


User provided reference genes

Program Settings