Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 5.1e-119 431.0 208 100.0
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 1.2e-107 393.3 208 93.3
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 1.9e-102 375.9 208 87.5
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 1.9e-102 375.9 208 87.5
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 4.3e-102 374.8 208 87.0
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 3.7e-101 371.7 208 85.6
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 1.5e-99 366.3 208 85.6
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 3.3e-94 348.6 208 81.2
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 1.3e-93 346.7 208 79.3
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 4.1e-92 341.7 208 77.9
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 2.2e-90 335.9 208 76.0
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 8.5e-90 334.0 208 75.5
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 9.4e-89 330.5 211 76.8
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 9.4e-89 330.5 211 76.8
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 8.0e-88 327.4 220 74.1
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 3.1e-68 262.3 206 61.7
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 4.5e-67 258.5 206 61.2
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 1.0e-66 257.3 206 62.6
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 1.7e-66 256.5 206 62.6
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 1.1e-65 253.8 206 63.1
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 7.2e-65 251.1 206 58.7
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 7.2e-65 251.1 206 58.7
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.2e-64 250.4 207 58.9
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 1.6e-64 250.0 206 59.2
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 2.1e-64 249.6 206 60.2
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 6.1e-64 248.1 208 59.1
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.0e-63 247.3 206 57.8
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 1.0e-63 247.3 207 58.9
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 1.8e-63 246.5 206 56.8
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 8.9e-63 244.2 208 59.1
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 4.4e-62 241.9 223 55.2
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 5.7e-62 241.5 207 60.9
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 7.5e-62 241.1 206 58.7
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.8e-61 239.2 207 58.0
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 6.3e-61 238.0 206 59.2
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 1.4e-60 236.9 206 57.8
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 1.8e-60 236.5 206 57.3
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 2.4e-60 236.1 209 56.9
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 7.0e-60 234.6 206 56.8
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 1.0e-58 230.7 208 54.8
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 5.0e-58 228.4 206 54.9
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 1.5e-57 226.9 206 54.4
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 1.9e-57 226.5 206 55.3
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 5.6e-57 224.9 206 54.4
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 2.3e-55 219.5 206 53.4
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 4.0e-55 218.8 206 52.4
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 1.2e-54 217.2 206 52.4
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.5e-54 216.9 206 52.4
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 3.4e-54 215.7 222 48.2
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 7.5e-54 214.5 206 50.5
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 2.2e-53 213.0 205 52.2
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.7e-53 212.2 205 52.2
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 8.3e-53 211.1 205 50.2
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 1.1e-52 210.7 206 52.4
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 1.1e-52 210.7 206 49.5
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 1.9e-52 209.9 208 52.9
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 2.4e-52 209.5 209 53.1
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 4.1e-52 208.8 206 51.5
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.0e-51 206.5 206 53.4
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.5e-51 205.7 205 49.8
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.0e-50 204.1 205 51.7
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 5.0e-50 201.8 206 50.5
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 5.6e-49 198.4 206 51.5
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 9.5e-49 197.6 209 51.2
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 1.6e-48 196.8 206 49.5
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 2.8e-48 196.1 206 49.0
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 8.0e-48 194.5 206 48.5
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 8.0e-48 194.5 206 48.5
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 8.0e-48 194.5 206 48.5
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 1.1e-47 194.1 209 47.8
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.3e-47 193.0 209 49.3
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 2.0e-46 189.9 137 65.7
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 3.4e-46 189.1 207 48.3
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 4.4e-46 188.7 208 47.6
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 5.8e-46 188.3 206 47.6
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 9.8e-46 187.6 208 47.6
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 2.2e-45 186.4 206 48.1
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 2.9e-45 186.0 206 46.6
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 4.9e-45 185.3 209 46.9
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 6.4e-45 184.9 209 46.9
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 3.2e-44 182.6 209 47.4
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 5.4e-44 181.8 204 46.6
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.7e-43 179.5 206 47.1
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 2.7e-43 179.5 207 48.3
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.2e-40 170.6 224 42.4
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.6e-40 169.1 207 44.4
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 8.1e-40 167.9 206 43.7
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 4.0e-39 165.6 205 42.9
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 4.4e-38 162.2 205 40.5
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 9.2e-36 154.5 302 33.8
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.5e-35 152.5 205 41.0
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 7.8e-35 151.4 201 42.3
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 8.6e-34 147.9 206 38.8
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.6e-30 136.3 85 76.5
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 7.6e-30 134.8 203 37.4
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 1.4e-28 130.6 85 71.8
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 2.8e-24 116.3 132 43.2
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 2.6e-22 109.8 99 51.5
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.9e-20 103.6 142 37.3
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.9e-12 77.0 210 29.5
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 4.3e-09 65.9 93 36.6
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 5.8e-06 55.5 73 42.5


User provided reference genes

Program Settings